Pairwise Alignments

Query, 611 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  249 bits (637), Expect = 2e-70
 Identities = 176/576 (30%), Positives = 291/576 (50%), Gaps = 28/576 (4%)

Query: 39  KPLLLMSLLSACVA-MAEVTLVRYMGEIVDILSTQERHQFWEMHGERLWTMAALVLVVMP 97
           K  ++++L    VA MA V L   + ++VD LS        E   E++  +   +++   
Sbjct: 30  KGRVILALACLVVAKMASVGLPFVLKQLVDTLS--------EASVEQMIAVPIALVLAYG 81

Query: 98  ILALVHSML--LHQTILGNYP----MSIRWSTHRYLLKQSIGFFQRDFAGRVATKVMQNA 151
            L L+++++  +  T+ G         +  S   +L +  + F      G ++  + +  
Sbjct: 82  SLRLLNTVISEVRDTLFGRVTERAIRRLGLSVFDHLHRLDLAFHLERRTGGLSRDIERGT 141

Query: 152 NSV----RETVLKLVDLSVYIAVYMVSMLVMIAEADKILVVPILVWLLFYIAIQVYFVPR 207
           + V    R  V  +V   + I + +  +L     A  ++ +  +V    YI   ++    
Sbjct: 142 SGVSFLMRFMVFNIVPTLLEIGLVVGILLYNYGWAFALITLSAVV---AYILFSIFATEW 198

Query: 208 LKTISTDQANAQSQMTGRIVDTYTNITTVKLFSHSQRETTYAKSGMKQFLHTVYRQMRTL 267
                 + A A SQ   R +D+  N  TVK F++   E+      ++++     +   +L
Sbjct: 199 RTGFVREAAMADSQSNTRAIDSLLNYETVKYFNNEAYESEQYDHALERWEVAKRKNRLSL 258

Query: 268 TSLLYSVDLINYLLLFSIAALSIQLWLAETVTVGVIAIGITIALRMQGMSKWIMWEIRAL 327
            +L     LI  L +  + AL+        +T+G   +     +++     ++ +  R +
Sbjct: 259 FALNAGQALIISLAMTLMLALAATQVSQGAMTIGDFVLINAFMMQLFMPLNFLGFVYREI 318

Query: 328 FESVGTVIDSMNTIANPVEIEDRPQAKSLQVKFGELSFSQVRFGYSAQKTVFDDLNLVIQ 387
             ++  +    + +    +IED P A S Q+  G L F  V F Y   + +  D++  I 
Sbjct: 319 RGALANIERMFSLLDRQPKIEDGPDATSPQIAQGSLKFEGVSFRYG-DRPILSDVSFEIP 377

Query: 388 AGEKVGIVGRSGAGKSTLVNLLLRFYDVQSGQIRIDGQDISHVSQESLRRHIGMITQDTS 447
           AG KV IVG SGAGKST+V LL RFY+ Q G I IDG D   ++Q +LR  I ++ QDT 
Sbjct: 378 AGHKVAIVGDSGAGKSTIVKLLFRFYETQQGTITIDGHDTKALTQHALRSAIAIVPQDTV 437

Query: 448 LLHRSIRDNILYGNPDADQAAIEEAARQAHAHDFIQELQDEQGRTGYDVQVGERGVKLSG 507
           L + S+ +NI YG P A    ++ A   AH  +F+ +L +     G+  +VGERG+KLSG
Sbjct: 438 LFNDSLMENIRYGLPGASDEQVKAAIELAHLSNFVSQLSE-----GWHTKVGERGLKLSG 492

Query: 508 GQRQRIAIARVLLKNAPILIMDEATSALDSEVESAIQENLHTLMAGKTVIAIAHRLSTIA 567
           G++QR+AIAR +LK +P+L+ DEATS+LDS  E AI   L  +  G T + IAHRLST+ 
Sbjct: 493 GEKQRVAIARAILKGSPLLVFDEATSSLDSHSEQAILNALKEMAKGHTSLVIAHRLSTVV 552

Query: 568 AMDRLIVMDEGKIVEQGTHQELLAHKGIYAQLWAHQ 603
             D+++V+ +GKIVE+G HQ LLA  G+Y +LW  Q
Sbjct: 553 DADQILVLSQGKIVERGDHQSLLAADGLYKKLWTVQ 588