Pairwise Alignments

Query, 611 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 597 a.a., multidrug resistance ABC transporter, ATP-binding and permease components from Caulobacter crescentus NA1000

 Score =  283 bits (725), Expect = 1e-80
 Identities = 198/565 (35%), Positives = 291/565 (51%), Gaps = 26/565 (4%)

Query: 51  VAMA-EVTLVRYMGEIVDILSTQERHQFWEMHGERLWTMAALVLVVMPILALVHSMLLHQ 109
           VA+A ++ L    G +VD ++TQ R         + W+  A+ + V    A+V + + H+
Sbjct: 47  VAVAFDLALPYAAGHLVDTVATQPRGD------AQAWSALAIFVGVYFAFAVVRN-IAHR 99

Query: 110 TILGNYPMSIRWSTHRYLLKQ---SIGFFQRDFAG---RVATKVMQNANSVRETVLKLVD 163
             +     ++   T+    K    S  +    FAG   R  T+ M   +SV + V   + 
Sbjct: 100 FWIPLAARNMEEMTNESFAKVQAFSSDWHADSFAGATVRKLTRAMWGYDSVTDAVTIWLG 159

Query: 164 LSVYIAVYM-VSMLVMIAEADKILVVPILVWLLFYIAIQVYFVPRLKTISTDQANA-QSQ 221
             V + + + ++MLV    A  I +V +      Y+ + +    R    S  ++NA  S+
Sbjct: 160 PGVIVLIGLSIAMLVRQPLAGIISLVVVAA----YLTVNLVITERYVRPSNLKSNALDSK 215

Query: 222 MTGRIVDTYTNITTVKLFSHSQRETTYAKSGMKQFLHTVYRQMRTLTSLLYSVDLINYLL 281
           + G + D  T+  TVK F    RE         Q+   V       T +    +L+  +L
Sbjct: 216 IGGALADAVTSNPTVKSFGAETREAERLAKVTAQWREAVMVTWNRFTDVWLGQNLLLVVL 275

Query: 282 LFSIAALSIQLWLAETVTVGVIAIGITIALRMQGMSKWIMWEIRALFESVGTVIDSMNTI 341
              +    +  W   T T G +A  IT  + M G  + +   IR L + +    D     
Sbjct: 276 QAGLTGAMVWGWTQGTATPGDVAFAITAFMLMSGYLRNLGENIRMLQKGLDDTEDVAAWT 335

Query: 342 ANPVEIEDRPQAKSLQVKFGELSFSQVRFGYSAQKT-VFDDLNLVIQAGEKVGIVGRSGA 400
               +I D P A   Q   G + F  V F Y A    ++D  +L I  GE+V +VG +G+
Sbjct: 336 RLAPQIADDPNAPEFQPGSGAIEFQDVTFRYKAAGAPLYDRFSLKIAPGERVALVGPTGS 395

Query: 401 GKSTLVNLLLRFYDVQSGQIRIDGQDISHVSQESLRRHIGMITQDTSLLHRSIRDNILYG 460
           GKST V L+ R +D+Q G + IDGQD+S V Q SLRR I ++ QD +L HR++ +NI YG
Sbjct: 396 GKSTFVKLIQRLHDLQDGAVVIDGQDVSTVKQASLRRAIAVVPQDPALFHRTLFENIAYG 455

Query: 461 NPDADQAAIEEAARQAHAHDFIQELQDEQGRTGYDVQVGERGVKLSGGQRQRIAIARVLL 520
            PDA +  +E+AA +A AH+FI  L       GYD  VGERGVKLSGG+RQR+AIAR  L
Sbjct: 456 KPDATREEVEDAAIKARAHEFILRLPK-----GYDTLVGERGVKLSGGERQRVAIARAFL 510

Query: 521 KNAPILIMDEATSALDSEVESAIQENLHTLMAGKTVIAIAHRLSTIAAMDRLIVMDEGKI 580
            +APIL++DEATS+LD E E  +QE    LM G+T I IAHRLST+   DR++V   G++
Sbjct: 511 ADAPILVLDEATSSLDVETEGHVQEAAEALMEGRTTIVIAHRLSTVRGADRILVFQGGRV 570

Query: 581 VEQGTHQELLAHKGIYAQLWAHQTG 605
           VE+G H EL A  G+YA+L A   G
Sbjct: 571 VEEGRHAELTAKGGVYARLNAISAG 595