Pairwise Alignments

Query, 611 a.a., DNA helicase RecQ from Vibrio cholerae E7946 ATCC 55056

Subject, 636 a.a., ATP-dependent DNA helicase from Sinorhizobium meliloti 1021

 Score =  516 bits (1328), Expect = e-150
 Identities = 275/600 (45%), Positives = 381/600 (63%), Gaps = 11/600 (1%)

Query: 14  ATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLV 73
           + P  +L  ++GY  FR  QQ V++  +AG D++V+ PTG GKSLC+QIPAL   GV +V
Sbjct: 35  SNPLDLLKRIYGYSTFRGQQQAVVDHVVAGGDAVVLFPTGAGKSLCFQIPALCRRGVGIV 94

Query: 74  ISPLISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAE 133
           +SPLI+LM+DQV+ LK  G+ A  +NS+L R+E IA+   +   +L LLYV+PER +T  
Sbjct: 95  VSPLIALMRDQVEALKQLGIRAAALNSSLTRDEAIAVRRALSRDELDLLYVTPERAVTDG 154

Query: 134 FIERLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRH 193
           F E ++   +A+ A+DEAHC+SQWGHDFRPEY  LG L +RFP VP +ALTATAD  TR 
Sbjct: 155 FAEMIADADIALFAIDEAHCVSQWGHDFRPEYRGLGCLAERFPGVPRIALTATADPHTRD 214

Query: 194 DIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVE 253
           D+++RL L     +  SFDRPNI Y +VE+ +P  Q++R+L   +   GI+YC SR KVE
Sbjct: 215 DMIERLGLGGARVFASSFDRPNIAYEIVERDQPRQQLLRFLSRFKDASGIVYCLSRAKVE 274

Query: 254 MLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 313
              E L    IRA  YHAGM+   R   Q+AF +++   +VATVAFGMGI+KP+VR+V H
Sbjct: 275 DTAEWLDAQGIRALPYHAGMERAARDAHQDAFLKEENLCLVATVAFGMGIDKPDVRYVAH 334

Query: 314 FDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQ---KQVESHK 370
            D+P ++E+YYQETGRAGRDGLP+E  M Y  AD+   RRM+DE   GA    K++E  K
Sbjct: 335 LDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMADVIQRRRMIDE--GGAPEEIKRIERAK 392

Query: 371 LTAMGAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKRFDATEEARKALSCVYRVN 430
           L ++ A  E   CRRQ +L +FGE     CG+CD CL P + +D TE A KAL+ VYR  
Sbjct: 393 LNSLLAICETAGCRRQAILAHFGEAHPGGCGHCDTCLKPVETWDGTEAAIKALAAVYRTG 452

Query: 431 QNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNIT 490
           + FG G++++VL G  N +    GH  +  +G G+D     W SIFRQL+  G++  +  
Sbjct: 453 ERFGTGHLIDVLTGSVNEKTERFGHVDMPVFGAGKDLPARTWQSIFRQLLAAGLISVDHA 512

Query: 491 RNSTLQLTEEARPLLRGEMNIELAVPRLDT----AARAAK--SDKLSGKNYDKKLFAKLR 544
               L+L  EAR + R E  +     R  +     AR +K  S++      D +LF +LR
Sbjct: 513 AFGALKLEPEARSVFRRERQVLFRKDRPSSGKAKTARGSKPASERSDLAGSDLELFERLR 572

Query: 545 KLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQ 604
             R S+A +  +PPYVVF D TLI +A+  P  + E+L V G+G+ K E+Y + FL +I+
Sbjct: 573 SERLSLAREMDVPPYVVFPDTTLIALAKRRPRDFEELLDVPGIGESKRERYGEAFLAVIE 632