Pairwise Alignments

Query, 611 a.a., DNA helicase RecQ from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., ATP-dependent DNA helicase RecQ (NCBI) from Rhodospirillum rubrum S1H

 Score =  519 bits (1336), Expect = e-151
 Identities = 272/605 (44%), Positives = 385/605 (63%), Gaps = 11/605 (1%)

Query: 9   SSALFATPERVL-HEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVL 67
           + A+ A P RVL  +++G++ FR GQ+ +I A L G D L +MPTG GKSLCYQ+PAL+ 
Sbjct: 23  ADAVSADPARVLLADIWGFKDFRPGQEAIIRAVLGGEDVLAVMPTGSGKSLCYQLPALMR 82

Query: 68  EGVTLVISPLISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPE 127
           +GVTLV+SPLI+LM+DQV QL A GVAA  +NS++  +    + + +  G+LKLLYV+PE
Sbjct: 83  QGVTLVVSPLIALMRDQVAQLDALGVAAGALNSSIDMDGYRRVMDGLRGGRLKLLYVAPE 142

Query: 128 RVLTAEFIERLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATA 187
           R+   + +  L    +  +A+DEAHC+SQWGHDFRP+Y  LG++++    V  +A TATA
Sbjct: 143 RLARPDTLSLLRDSGVTALAIDEAHCVSQWGHDFRPDYLCLGKVREDLGGVQTVAFTATA 202

Query: 188 DDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGIIYCG 247
           D ATR DI  RL    P  ++G FDRPN+R  +  K     ++  ++    G+ G+IYCG
Sbjct: 203 DAATRDDIAGRLFPAPPRLFIGGFDRPNLRLAMRPKGDTRRRMFEFVAAHTGESGVIYCG 262

Query: 248 SRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPN 307
           SR + E L E L G   RA  YHAG+D   R   Q+AF  +D  ++VATVAFGMGI+KP+
Sbjct: 263 SRARTEELAEGLRGAGHRALPYHAGLDKPVRDANQDAFLAEDGLVMVATVAFGMGIDKPD 322

Query: 308 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDG-AQKQV 366
           VRFV H D+PR+IE+YYQE GRAGRDGL A+ +  Y   D+   R  ++E   G  QK+V
Sbjct: 323 VRFVCHADMPRSIEAYYQEIGRAGRDGLAADTLTFYGLDDVRLHRMRIEESQAGDEQKRV 382

Query: 367 ESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKRFDATEEARKALSCV 426
           E  +L A+ A  EA  CRRQ LL YFGE R +PCGNCD+C++  + FD T EA+KA+S +
Sbjct: 383 EIQRLNALLALCEAPRCRRQTLLGYFGE-RTEPCGNCDLCINGVESFDGTIEAQKAMSAM 441

Query: 427 YRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLIHKGMLY 486
            R  Q F   +++ +L G Q   I ++GHDK+ T+G+G+DH+ + W SIFRQ+   G++ 
Sbjct: 442 LRTGQRFATEHLINILVGTQTDAITQYGHDKLPTFGVGKDHTRNVWRSIFRQISAGGLIS 501

Query: 487 QNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDK--------LSGKNYDKK 538
            +I  +    +TE  R +LRG+  + L    L+ A R  + DK        +  +  D+ 
Sbjct: 502 LDIANHGRWLMTEAGRAVLRGQAGVALRSDVLEAAGRGERKDKERRASAPAVQLEADDRA 561

Query: 539 LFAKLRKLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADP 598
           LF  LR  R+ +A  E +P YVVF+D TLI++A   P S   M  ++G+GQ KL +Y   
Sbjct: 562 LFDALRAKRQELARAENVPAYVVFADRTLIELATKRPPSLDAMREIHGIGQSKLARYGAA 621

Query: 599 FLDLI 603
           FL++I
Sbjct: 622 FLEVI 626