Pairwise Alignments

Query, 611 a.a., DNA helicase RecQ from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., RecQ family ATP-dependent DNA helicase from Parabacteroides merdae CL09T00C40

 Score =  253 bits (647), Expect = 1e-71
 Identities = 140/355 (39%), Positives = 216/355 (60%), Gaps = 8/355 (2%)

Query: 16  PERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVIS 75
           P +VL   +GY  FR GQ EVI++ L+G D+L +MPTGGGKS+ +Q+PAL   G+ LVIS
Sbjct: 4   PLQVLKHYWGYDGFRPGQAEVIDSILSGHDTLALMPTGGGKSITFQVPALANSGICLVIS 63

Query: 76  PLISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFI 135
           PL++LMKDQV  L+  G+ +  ++S +   E++   +    G  K LY+SPER+ +  F 
Sbjct: 64  PLVALMKDQVKNLQKRGILSAFISSEMPHWEILQQLDNCILGDYKFLYISPERISSELFQ 123

Query: 136 ERLSHL--PLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRH 193
           E+L  L   + ++ VDEAHCISQWG+DFR +Y  +  ++   P+V V+A+TA+A  A   
Sbjct: 124 EKLKTLSSKVNLLVVDEAHCISQWGNDFRRDYRLIADIRDAIPHVQVIAVTASATAAVVA 183

Query: 194 DIMQRLQLNEPHQ-YLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKV 252
           DI ++L   + ++ +  SF+R N+ +++ +    + ++   L    G   +IY  +RK V
Sbjct: 184 DICEQLHFRKGYRIFKTSFERKNLSFVVRKTDNKLKEICHILSAVPGS-AVIYSRTRKGV 242

Query: 253 EMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 312
           E    KL    I A  +HAG+D   +   Q  + +   +++VAT AFGMGI+K +VR V+
Sbjct: 243 EEYAGKLRAAGISAEYFHAGLDPVLKTERQADWVKGFTRVLVATNAFGMGIDKGDVRVVI 302

Query: 313 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVE 367
           H + P ++E+YYQE GRAGRDG  A A+ L  P D+  ++R    +P  A   +E
Sbjct: 303 HTEFPDSMEAYYQEAGRAGRDGKRAYAVALLGPQDITDIKR----RPSNAFPTIE 353



 Score = 28.5 bits (62), Expect = 8e-04
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 370 KLTAMGAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICL 407
           ++  +  + E   CR++ +  YFG      CG CD CL
Sbjct: 529 RIEKVAEYLETHGCRQEFISEYFG-MEGTRCGCCDNCL 565