Pairwise Alignments

Query, 611 a.a., DNA helicase RecQ from Vibrio cholerae E7946 ATCC 55056

Subject, 699 a.a., ATP-dependent DNA helicase RecQ from Phaeobacter inhibens DSM 17395

 Score =  518 bits (1334), Expect = e-151
 Identities = 272/608 (44%), Positives = 393/608 (64%), Gaps = 10/608 (1%)

Query: 1   MTATLMAESSALFATPER-VLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLC 59
           MTA   A S A+ AT    +L E+FG+  FR GQ+E+++A  AG + L IMPTGGGKSLC
Sbjct: 8   MTAPSGATSPAVSATDATPLLREIFGFDGFRPGQEEIVDAVTAGENVLAIMPTGGGKSLC 67

Query: 60  YQIPALVLEGVTLVISPLISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQL 119
           +Q+PAL+ EGVT+VISPLI+LM+DQV  L+  GV A  + S    EE  A++  +  G+L
Sbjct: 68  FQLPALLREGVTVVISPLIALMRDQVRALQEVGVTAGALTSGNTDEETEALWQSIEEGRL 127

Query: 120 KLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVP 179
           KLLY++PER+ +   +  L  + +++IAVDEAHC+SQWGHDFRP+Y  +G+L+ R  +VP
Sbjct: 128 KLLYMAPERLASGAAMGMLRRIGVSLIAVDEAHCVSQWGHDFRPDYLRIGELR-RALDVP 186

Query: 180 VMALTATADDATRHDIMQRLQLNE-PHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQR 238
           + A TATAD  TR +I+++L   E P  +L  FDRPNI      K  P  Q++ +   ++
Sbjct: 187 LAAFTATADQETREEIVEKLFDGEAPRSFLRGFDRPNIHLAFATKDSPRRQILEFAAARK 246

Query: 239 GQCGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVA 298
           GQ GI+YCG+R K E L+  L      A  YH GMDA++R  V+  F R+D  IVVATVA
Sbjct: 247 GQSGIVYCGTRAKTEALSAGLREAGHAACYYHGGMDAEDRRGVETRFAREDGLIVVATVA 306

Query: 299 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEK 358
           FGMGI+KP++R+V H D+P++IE+YYQE GR GRDG PAE + L+ P D+   R  +DE 
Sbjct: 307 FGMGIDKPDIRWVAHADLPKSIEAYYQEIGRGGRDGAPAETLTLFGPEDIRLRRSQIDEG 366

Query: 359 PDGAQKQVESH-KLTAMGAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKRFDATE 417
              A+++   H +L A+   AEA  CRRQ LL YFGE  + PCGNCD+C  P   FD T 
Sbjct: 367 LAPAERRGADHARLNALLGLAEALKCRRQTLLAYFGETAE-PCGNCDLCDQPVDVFDGTT 425

Query: 418 EARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFR 477
             RKALS + R N+ +G G+++++L G    R+R+  HD ++ +  G+++    W ++FR
Sbjct: 426 AVRKALSAILRTNETYGSGHLIDILVGNTTDRVRDKRHDDLSVFACGKEYGKRQWQAVFR 485

Query: 478 QLIHKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSG--KNY 535
           Q++   ++  +  R+  L++TE A P+LRGE +I L   R DT + A +S  +     + 
Sbjct: 486 QMMGHDLVRPDPERHGALRMTEAALPVLRGEQDIAL---RRDTISSAKRSPAVKALVSDE 542

Query: 536 DKKLFAKLRKLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKY 595
           D  L + L+  R+++A+ + +P YV+F D TLI+MAE  P+S  +M  + GVG +KLE+Y
Sbjct: 543 DAPLLSALKAKRRALAEAQKVPAYVIFPDRTLIEMAETRPSSLDQMARIGGVGAKKLERY 602

Query: 596 ADPFLDLI 603
              FL +I
Sbjct: 603 GRDFLSVI 610



 Score = 32.3 bits (72), Expect = 7e-05
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 529 KLSGKNYDKKLFAKLRKLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVG 588
           KL+G++      A +    +    D+G    +  S A L  +A++ P    EM+    +G
Sbjct: 623 KLAGRDAGSLYDALMETQTRLARGDDGTDKPLSCSAAQLAKLAQMRPQD--EMVITRLLG 680

Query: 589 QRKLEKYADPFLDLIQ 604
           +R+ E++A  FLD+++
Sbjct: 681 ERRAERFAAAFLDVLR 696