Pairwise Alignments

Query, 611 a.a., DNA helicase RecQ from Vibrio cholerae E7946 ATCC 55056

Subject, 607 a.a., ATP-dependent DNA helicase RecQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  723 bits (1866), Expect = 0.0
 Identities = 351/589 (59%), Positives = 456/589 (77%), Gaps = 2/589 (0%)

Query: 20  LHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLIS 79
           L +VFGY+ FR GQ+EVIE    G D LVIMPTGGGKSLCYQ+PAL++ G+T+V+SPLIS
Sbjct: 17  LAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITIVVSPLIS 76

Query: 80  LMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLS 139
           LMKDQVD L   GV A  +NS+  RE  + +  ++H G+LKLLYVSPER+LTA+FIER+ 
Sbjct: 77  LMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLYVSPERLLTADFIERMQ 136

Query: 140 HLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRL 199
            LPL+M A+DEAHCISQWGHDFRPEYA+LGQLKQ FP+VP+MALTATAD ATR +I +RL
Sbjct: 137 SLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNICERL 196

Query: 200 QLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVEMLTEKL 259
            +N P + L SFDRPNIRY + EK    +Q+ ++L  Q G  GIIYC SR++V+ + E+L
Sbjct: 197 GIN-PFKLLSSFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSGIIYCSSRRRVDEVAERL 255

Query: 260 CGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRN 319
                 A +YHAGM  +ER  VQ++F +D + IVVATVAFGMGINK NVRFVVH+DIP++
Sbjct: 256 TLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVHYDIPKS 315

Query: 320 IESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAE 379
           IE+YYQETGRAGRDGL AEA ML+DPAD+  +R ++++   G Q+QVE HKL  M AFAE
Sbjct: 316 IEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVEFHKLNTMAAFAE 375

Query: 380 AQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVV 439
           AQTCRRQVLL+YF E   +PCGNCDICLDPPKR++ +E+A+K LSC+YR+ Q FGI +++
Sbjct: 376 AQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGSEDAQKVLSCIYRLGQRFGINHLI 435

Query: 440 EVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITRNSTLQLTE 499
           EVLRG +   I + GHDK++T+GIG+D SH+YW+S+ RQLIH G+  Q+ITR S++ L  
Sbjct: 436 EVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGLASQDITRGSSITLNP 495

Query: 500 EARPLLRGEMNIELAVPRLD-TAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPP 558
            ARP+L+GE+ + LA PR+  T+ +   +      NYD+KLFA+L+ LR+ IA+++ +PP
Sbjct: 496 SARPILKGEVALMLAEPRIQLTSIKRKTTQSRVPLNYDRKLFARLKTLRREIAEEQDVPP 555

Query: 559 YVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHL 607
           Y+VF+DATL +MA +MPTS GEMLAVNGVG+RKL ++   FLD I  +L
Sbjct: 556 YLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGGEFLDEIAAYL 604