Pairwise Alignments

Query, 611 a.a., DNA helicase RecQ from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., RecQ domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  260 bits (664), Expect = 1e-73
 Identities = 143/329 (43%), Positives = 198/329 (60%), Gaps = 7/329 (2%)

Query: 8   ESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVL 67
           E SAL +     L + FG+ +FR GQ EVI   LAG+ SL I PTG GKSLCYQ  AL L
Sbjct: 10  EGSALISR----LQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQL 65

Query: 68  EGVTLVISPLISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPE 127
             +TLV+SPL++L+KDQ++ L+  G+ A  ++STL  E+   +     +GQLKLL VS E
Sbjct: 66  PHLTLVVSPLLALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLLMVSVE 125

Query: 128 RVLTAEFIERLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATA 187
           R     F + +  +PL+M+ VDEAHCIS+WGH+FRP+Y  L    +      V+ LTATA
Sbjct: 126 RFKNERFRQFIQSIPLSMLVVDEAHCISEWGHNFRPDYLKLPDYCRELSIPLVLLLTATA 185

Query: 188 DDATRHDIMQRLQLNEPHQYLGSFDRPN--IRYMLVEKHKPVSQVIRYLETQRGQCGIIY 245
               + D+  R  +   H     F R N  +  + V     +  + + L++  G  GI+Y
Sbjct: 186 TRKVKQDMAIRFDIKPQHIVQTGFYRSNLDLTVLPVASENKLRILKQQLQSFDG-AGIVY 244

Query: 246 CGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINK 305
              +   E +  +LC     A +YHAG D D+R  +Q  F     QIVVAT+AFGMGI+K
Sbjct: 245 VTLQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDK 304

Query: 306 PNVRFVVHFDIPRNIESYYQETGRAGRDG 334
            N+RFV+H+D+P++IE+Y QE GRAGRDG
Sbjct: 305 SNIRFVIHYDLPKSIENYCQEIGRAGRDG 333



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 367 ESHKLTAMGAFAEAQTCRRQVLLNYFGEYR-DKPCGNCDIC 406
           E  ++  +  F E  TC    L  YF +    K CG+C +C
Sbjct: 527 EVARIAQLVRFFELTTCLNYNLARYFDDNAAPKSCGHCSVC 567