Pairwise Alignments

Query, 611 a.a., DNA helicase RecQ from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  522 bits (1345), Expect = e-152
 Identities = 271/591 (45%), Positives = 382/591 (64%), Gaps = 9/591 (1%)

Query: 17  ERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISP 76
           + +L  VFG+ +FR GQ+EV++A  AG D L IMPTGGGKSLC+Q+PAL  EG+T+VISP
Sbjct: 5   DTILSSVFGFSEFRPGQEEVVDAVCAGEDVLAIMPTGGGKSLCFQLPALAREGLTVVISP 64

Query: 77  LISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIE 136
           LI+LM+DQV  L+  GVAA  + S    EE  A++  +  G LK+LY++PER+     + 
Sbjct: 65  LIALMRDQVRGLREAGVAAGALTSGNTPEETDAVFEALEDGSLKILYMAPERLAHGGTVR 124

Query: 137 RLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHDIM 196
            LS   + ++AVDEAHC+SQWGHDFRP+Y  +G L+ R  +VPV A TATAD  TR +I+
Sbjct: 125 LLSRAGVGLLAVDEAHCVSQWGHDFRPDYLRIGDLR-RALDVPVAAFTATADAETRDEII 183

Query: 197 QRL-QLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVEML 255
            RL     P  +L  FDRPNI      K  P  Q++ +   ++GQ GI+YCG+R K E L
Sbjct: 184 ARLFPDTAPRVFLRGFDRPNIHLAFAAKDSPRRQILDFAGARKGQSGIVYCGTRAKTEGL 243

Query: 256 TEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 315
            + L      A  YH GM+A++R  V+  FQR+D  IVVATVAFGMG++KP++R+V H D
Sbjct: 244 AQALREAGHMACHYHGGMEAEDRRIVETRFQREDSLIVVATVAFGMGVDKPDIRWVAHAD 303

Query: 316 IPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESH-KLTAM 374
           +P++IE+YYQE GRAGRDG PAE + L+ P D+   R  +DE     +++   H +L A+
Sbjct: 304 LPKSIEAYYQEIGRAGRDGAPAETLTLFGPDDIRLRRSQIDEGLAPPERKGADHGRLNAL 363

Query: 375 GAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKRFDATEEARKALSCVYRVNQNFG 434
              AEA  CRRQVLL+YFGE     CGNCD+C   P+ FD T+  RKALS V R  ++FG
Sbjct: 364 LGLAEALRCRRQVLLSYFGE-DSAACGNCDLCDTAPEVFDGTDAVRKALSAVLRTGESFG 422

Query: 435 IGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITRNST 494
            G+++++L G    ++R+ GH+ + T+G+GRD     W  +FRQ++   +L  +  R+  
Sbjct: 423 AGHLIDILTGNATDKVRQRGHEDLPTFGVGRDLDKRTWQGVFRQMMGHDLLRPDAARHGA 482

Query: 495 LQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSG--KNYDKKLFAKLRKLRKSIAD 552
           L +T+ ARPLLRGE  IEL   R DT  +AA    +     + D  L + L+  R+++A+
Sbjct: 483 LVMTDAARPLLRGETTIEL---RRDTLRKAAHRPAVRALVSDEDAPLLSALKAKRRALAE 539

Query: 553 DEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLI 603
             G+P YV+F+D +LI+MAE  P +      ++GVG +KLEKY   FL++I
Sbjct: 540 AAGVPAYVIFTDRSLIEMAERRPDTLDAFAGISGVGAKKLEKYGAAFLEVI 590



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 522 ARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEM 581
           AR   + + +G  YD+ L A+   LR +   D+ L      S A L  +AE  P    +M
Sbjct: 601 ARRKLAGRAAGSTYDRLLEAQAALLRGAAGTDKPLS----CSAAILSRVAETRPRDEDDM 656

Query: 582 LAVNGVGQRKLEKYADPFLDLIQE 605
           + +  +G R+ E++   FL++++E
Sbjct: 657 VRI--LGDRRAERFGAAFLEVLRE 678