Pairwise Alignments

Query, 302 a.a., protein RarD from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., membrane protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 61.6 bits (148), Expect = 2e-14
 Identities = 64/267 (23%), Positives = 118/267 (44%), Gaps = 21/267 (7%)

Query: 10  AKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGRRWRSVVG 69
           A  G+L   SA  ++G   ++ K +  + AL+I  +R   + ++LA+++   R    +  
Sbjct: 4   ASSGLLELHSAVLLFGGTALFSKLI-PLGALDITVYRCAIAALVLALIVKATRHSLRL-- 60

Query: 70  VVHTPRKFWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGMLFLGER- 128
                R + + L   ++V  +W+ +  S+  + +    + ++  P++ VL+  L  G R 
Sbjct: 61  --GNKRDYGIALALGVIVSLHWVTYFASMQMSSVAIGMIAFFTYPVMTVLVEPLINGTRP 118

Query: 129 -LRKLQWFAVALAAIGVGIQLVVFGSVP----IVAIALATSFGFYGLLRKKI--QVDAQT 181
            LR L      L  + + I     G+      +V +  A  F    LL K+   Q     
Sbjct: 119 HLRDLVCGVAVLTGVALLIPEASLGNDITLGILVGVLSAALFTARNLLHKRYFAQYTGPQ 178

Query: 182 GLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVV-TTLPLLCFTGAAAR 240
            +F +TL     A ++L    ++   ++  + WQL +LL   GV+ T  P   FT A   
Sbjct: 179 AMFYQTL----VAVLFLGSFVESTPPEVTSDVWQLLILL---GVIFTATPHALFTSALRH 231

Query: 241 LKLSTLGFFQYIGPSLMFLLAVLVYGE 267
           L   T+G    + P    +LA+L+ GE
Sbjct: 232 LSAKTVGLVSCLQPFYGTVLALLLLGE 258