Pairwise Alignments

Query, 302 a.a., protein RarD from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., transporter DMT superfamily protein (RefSeq) from Shewanella loihica PV-4

 Score =  178 bits (451), Expect = 2e-49
 Identities = 102/292 (34%), Positives = 167/292 (57%), Gaps = 3/292 (1%)

Query: 3   MTPDQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWS--FVLLAVLIHL 60
           M    Q + KG  LAI ++ +WG+ P+Y++ L      E+L+ R++ S  F+LL  L+ L
Sbjct: 1   MPSHTQVSAKGNALAIVSFLLWGLLPLYYQFLPGADITEMLAIRLLCSVPFMLLVFLL-L 59

Query: 61  GRRWRSVVGVVHTPRKFWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLL 120
           G+   S+  +        L  + +L++  +W  F W++    +L ASLG++INPL  + L
Sbjct: 60  GKPLPSLALLRTNLPSVALCALASLIMCVSWYSFTWALTHGQVLAASLGFFINPLFAIGL 119

Query: 121 GMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIALATSFGFYGLLRKKIQVDAQ 180
           G+LFL +RL   Q +AV L  +G+G  ++ +  +P +A+ + + F  YGL +K I+ D+ 
Sbjct: 120 GVLFLKDRLTVAQKWAVLLGTLGIGYMVMAYAQLPWLALLMGSFFALYGLCKKFIRFDSL 179

Query: 181 TGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAAR 240
           T + +E   + P AA YL WL+ T  S+   +     LL + +  VT LPL+ F  A   
Sbjct: 180 TSVTIEAALLTPIAAGYLFWLSATGQSEALSSGTGTMLLYMGSAPVTLLPLIFFALAIRH 239

Query: 241 LKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGL 292
             LS +G  QYI P++ FLLA+ ++ E F S KA++FA IW  L++ S++ L
Sbjct: 240 TSLSMVGLLQYIEPTMHFLLAIFLFNETFDSVKAVSFALIWVGLLLCSLEAL 291