Pairwise Alignments

Query, 302 a.a., protein RarD from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., chemotaxis protein from Burkholderia phytofirmans PsJN

 Score =  135 bits (340), Expect = 1e-36
 Identities = 88/292 (30%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 6   DQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGRRW- 64
           +Q D ++GI L++ A T + +   Y   L  +S L+I + RV+W+     +L+ L +R  
Sbjct: 2   NQYDLRRGIALSVCATTTFALLSAYATLLAPLSGLDIFAWRVIWTVPGALLLVALRKRLP 61

Query: 65  ---RSVVGVVHTPRKFWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLG 121
              R +  +V  P+    ++V+A L+G    +F+W+     ML+ SLGY++ PL  VL+G
Sbjct: 62  ILRRLLYRMVTEPKLGMAMIVSAALLGVQLWVFLWAPLHGRMLEVSLGYFLMPLTMVLVG 121

Query: 122 MLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIALATSFGFYGLLRKKIQVDAQT 181
             +  ERL  LQW AVA AA GVG +L V G+     + ++  +  Y +LR+KI  D+  
Sbjct: 122 RFYYHERLDGLQWLAVACAATGVGHELWVTGAFSWPTLLVSLGYPPYFVLRRKINHDSLA 181

Query: 182 GLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAARL 241
              +E   +LP  AI L++   +  + +A +  +  LLL   G ++T+ L  +  A+  L
Sbjct: 182 MFTVEMALLLP-PAIALVFNGGS-LAMIAGHPGRWWLLLPGLGALSTIALASYLKASRLL 239

Query: 242 KLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLK 293
            ++  G   Y+ P L+ L+++ V GE  +  +  T+  IW A+ + ++  ++
Sbjct: 240 PVALFGILGYVEPVLLVLISITVLGETLSVSQLATYVPIWIAVALTALHSVR 291