Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., L-rhamnose operon transcriptional activator RhaR from Pseudomonas fluorescens FW300-N2E2

 Score =  118 bits (295), Expect = 2e-31
 Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 11/271 (4%)

Query: 1   MVSMDTVNYRPSAYPAISLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQ 60
           M + + ++ +  A   I  + A +   A++ H+H    +G+  QGVQ+F+ +   H    
Sbjct: 1   MTARNWIDLKQDATSGIETVRAHFEGHAYDPHWHDTYLVGVTEQGVQQFHCRRQQHNSTP 60

Query: 61  GGVVLMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTL----EANQIEQVIGFEQLIVQD 116
           G V L+ P ELHDG+A  + G+  +   +EP+WL++ L    +       +GF   +  D
Sbjct: 61  GKVFLLEPGELHDGNAPHDHGFTYRTLYLEPQWLERELRSLFDVAPDNAQLGFAATLTDD 120

Query: 117 PTLFHSLQQLHHLLRQDNLS---QLAKDCLPYQGFAPLLERYSYLKQPTVKPLGQHNLAL 173
             L  +       L +  +    Q A D L       L  R      P +  + Q     
Sbjct: 121 ARLASATAMAFQSLHEQEIRIVRQTALDTLLANLTQHLHWRARINPDPRLPLVAQQ---- 176

Query: 174 LKEWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSG 233
            ++++ S L + I L+ LAQ+  +   +  R FKA  GL P+A+L +LRL +A +LL  G
Sbjct: 177 ARDYLHSHLSEDIGLDDLAQVAGVDRFRLTRAFKAAFGLAPHAYLIQLRLARARRLLARG 236

Query: 234 KPGTDVAYQVGFYDQAHFSKAFKATYGLSPS 264
           +    VA  +GF DQ+H  + F+  Y LSP+
Sbjct: 237 ESAVAVAAMLGFADQSHLGRWFQRAYRLSPA 267