Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 268 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score =  102 bits (253), Expect = 1e-26
 Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 6/254 (2%)

Query: 10  RPSAYPAISLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGGVVLMSPD 69
           RP        +EA +  + F  H H    IG    GV RF ++        G   ++ PD
Sbjct: 11  RPHEPGRFERLEAYFAGYGFAPHRHDTYAIGCTVSGVHRFNYRKCARNSLPGDTFVLHPD 70

Query: 70  ELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQIEQVIGFEQLIVQDPTLFHSLQQLHHL 129
           ELHDG A S  G++ +   IEP  LQ  L    +  +   +  + +DP L  ++  L   
Sbjct: 71  ELHDGEAGSEAGFRYRAVYIEPALLQGPLGGQPLPFI---DDGVSRDPRLQRAIGSLLQC 127

Query: 130 LRQDNLSQLAKDCLPYQGFAPLLERYSYLKQPTVKPLGQHNLALLKEWVLSQLDQPIRLE 189
           L +       +D L     A ++ + +  K    + +        ++++   L QPI L+
Sbjct: 128 LDRPLEGLEEQDAL--YDLAQIMAKVARTKGRR-RSVDFRAAERARDYIHEFLTQPISLD 184

Query: 190 QLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDVAYQVGFYDQA 249
           +L ++         R F+A  G +PY +L   RL+Q  +LL  G   +D A   GF DQ+
Sbjct: 185 ELERVSDRDRWSLSRDFRALFGTSPYRYLTLRRLDQVRRLLLGGSAPSDAALIAGFVDQS 244

Query: 250 HFSKAFKATYGLSP 263
           H S+ FK  YGL P
Sbjct: 245 HMSRQFKQAYGLPP 258