Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 279 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score =  110 bits (275), Expect = 3e-29
 Identities = 72/260 (27%), Positives = 122/260 (46%), Gaps = 7/260 (2%)

Query: 9   YRPSAYPAISL-IEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGGVVLMS 67
           +R +A P +     AD R+  +  H H    IG IT G   +++  A  ++ +G +VL++
Sbjct: 12  WRDAALPFLEARAVADGRKVCYAPHCHETFSIGAITAGASTYFNGDAQERIARGTLVLIN 71

Query: 68  PDELHDGHAHSNTGYQVQVFSIEPEWL---QQTLEANQIEQVIGFEQLIVQDPTLFHSLQ 124
           P  +H  +      +   +F ++  WL   Q  L  +     I +  +   D  LF+ L 
Sbjct: 72  PQTVHACNPIDGRPWSYLMFYVDARWLGALQHELGVSSDGHFIPYAPIQSLDQALFNGLT 131

Query: 125 QLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLK-QPTVKPLGQHNLALLKEWVLSQLD 183
           QL+  LR      L K     + F  L +  +    QP  +PL Q  L+   +++     
Sbjct: 132 QLYATLRDPQADTLRKQSAAVEYFTLLQQTLAPAPTQPHAEPLQQ--LSRAADYIAEHCT 189

Query: 184 QPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDVAYQV 243
           + +RLE + Q  +LSP+   R FK   G+TP+A+L   R++++   L+ G    ++A   
Sbjct: 190 EALRLEDICQAAELSPSYLIRTFKQHYGMTPHAYLLNRRIQRSQHWLRQGLDLAEIALAA 249

Query: 244 GFYDQAHFSKAFKATYGLSP 263
           GF DQAHF + FK     +P
Sbjct: 250 GFADQAHFQRTFKRQLAATP 269