Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., AraC/XylS family transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  144 bits (364), Expect = 2e-39
 Identities = 95/274 (34%), Positives = 144/274 (52%), Gaps = 10/274 (3%)

Query: 2   VSMDTVNYRPS-AYPAISLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQ 60
           +  + +++R S +     L  A Y++F F RH H D+H+G + +G Q F H+G  H + +
Sbjct: 1   MQQEIIDFRQSQSLAGAELSRASYQRFDFGRHVHEDLHLGAVIRGAQAFNHKGTGHTLCR 60

Query: 61  GGVVLMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQIEQVIGFEQLIVQDPTLF 120
           G +  +SPDE HDG A ++TGY+V V S+ P+W      A       GF Q   +D  L+
Sbjct: 61  GDLSTLSPDECHDGIAATDTGYEVLVLSL-PQWHLDRFAAELGISFGGFCQPKRKDMALY 119

Query: 121 HSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQ----PTVKPLGQHNLALLKE 176
            +   LH LL Q   + L ++      F  LL + S  ++     TVK      + L K 
Sbjct: 120 QAFVSLHRLLYQAE-NPLLEETALLDFFQRLLGQCSKSEKVTNTGTVKAGLSREIRLAKS 178

Query: 177 WVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLL--QSGK 234
            +++   +P+ LE L     L   +  RHF+AQTGL+P+ W  RLRLE+A K L    G 
Sbjct: 179 -LMADTPEPVTLELLGDATGLGRYRLLRHFRAQTGLSPHQWQLRLRLERAKKSLMQNDGN 237

Query: 235 PGTDVAYQVGFYDQAHFSKAFKATYGLSPSLITR 268
             TD+A+Q GF D +HF++ F+  +  SPS   R
Sbjct: 238 SLTDIAHQHGFSDLSHFTRHFRMAFLTSPSAYRR 271