Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  109 bits (272), Expect = 8e-29
 Identities = 72/255 (28%), Positives = 126/255 (49%), Gaps = 5/255 (1%)

Query: 17  ISLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGGVVLMSPDELHDGHA 76
           I L++A Y Q  F RH H    +G+I  G QRFY  G  H   Q  ++L++ DE+H+G +
Sbjct: 51  IELLDASYHQQNFSRHSHEGYTVGVIETGAQRFYRTGGDHTAPQHSIILVNADEVHNGRS 110

Query: 77  HSNTGYQVQVFSIEPEWLQQTLE--ANQIEQVIGFEQLIVQDPTLFHSLQQLHHLLRQDN 134
            ++ G+  +     P+   +  +    +      F + +V D  L   L+     L   +
Sbjct: 111 ATDFGWSYRAMYPLPQQFARVHDELGGKAGDAPYFPEPVVHDKPLAELLRLTFDTLSSSD 170

Query: 135 LSQLAKDCLPYQGFAPLLERYSYLKQPTVKPLGQH-NLALLKEWVLSQLDQPIRLEQLAQ 193
            + L ++ L Y   A L+  +    +P  K L    +LAL+K+++       + L+ LA+
Sbjct: 171 -NALLRESLIYTSLARLMSHHG-ASRPVEKSLRPTAHLALVKQFLDDMPTADVSLDALAK 228

Query: 194 LCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDVAYQVGFYDQAHFSK 253
           L  LSP    + F+ Q GL P+A+  + R+  A ++++ G    +VA   GF+DQ+H ++
Sbjct: 229 LAGLSPFYLIKQFQRQYGLPPHAYQIQGRIRLAKQMIRQGCKLLEVALACGFHDQSHLNR 288

Query: 254 AFKATYGLSPSLITR 268
            FK   G++P    R
Sbjct: 289 HFKRAMGVTPGQYAR 303