Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 279 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  162 bits (409), Expect = 1e-44
 Identities = 98/261 (37%), Positives = 148/261 (56%), Gaps = 7/261 (2%)

Query: 9   YRPSAYPAISLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGGVVLMSP 68
           ++ S    + L  A +  FAFE+H HLD HIG++  G QR++H+G+ +++  G +  ++P
Sbjct: 13  WQASILKEMELSRAQFTHFAFEKHVHLDYHIGVVCHGGQRYHHRGSEYRLTPGNISTLNP 72

Query: 69  DELHDGHAHSNTGYQVQVFSIEPEWLQQTLEA-NQIEQVIGFEQLIVQDPTLFHSLQQLH 127
           DE H+G + ++ GY+  V S+   ++QQ   A NQ E  + F   I+ DP L     +LH
Sbjct: 73  DESHNGQSIADGGYEALVMSLPTSYVQQVGGALNQGE--LYFSTPILDDPKLRAYFIRLH 130

Query: 128 H--LLRQDNLSQLAKDCLPYQGFAPLLERYSYLKQ-PTVKP-LGQHNLALLKEWVLSQLD 183
               L Q N++ L  + L     + L  R+  L+  P+ +  L    L  +K+     LD
Sbjct: 131 RQLTLHQANITPLEAETLLLGFISELFYRHGKLRNLPSCQARLSGAQLDNIKQQFHQGLD 190

Query: 184 QPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKPGTDVAYQV 243
           Q   LEQLA    LS  QF R FKA TG+TP+A+L+RLRLE A K L  G      AY +
Sbjct: 191 QEFELEQLALSVDLSKFQFLRQFKAATGMTPHAYLKRLRLEYAKKALMRGDSAISTAYDL 250

Query: 244 GFYDQAHFSKAFKATYGLSPS 264
           GF+DQ+HF+KAFK  + ++P+
Sbjct: 251 GFFDQSHFNKAFKRAFLITPA 271