Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  173 bits (438), Expect = 4e-48
 Identities = 103/271 (38%), Positives = 156/271 (57%), Gaps = 14/271 (5%)

Query: 1   MVSMDTVNY-RPSAYPAISLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVG 59
           M  ++ +NY R      I L +A++  F+F++H HLD H+G++TQG Q+F ++G+ +Q+G
Sbjct: 1   MTPVEHINYWRHPNLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLG 60

Query: 60  QGGVVLMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQIEQVIG-----FEQLIV 114
           Q G+  ++PDE HDG +    GY+V+V SI  +++      N I Q +G     F   ++
Sbjct: 61  QHGLSTLNPDETHDGQSRDAEGYRVKVMSIPVDFM------NAISQEMGQATHFFNAPMI 114

Query: 115 QDPTLFHSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERY--SYLKQPTVKPLGQHNLA 172
            D  L+    QLH+LL Q+  ++LA +         LL R+    LK    + L    L 
Sbjct: 115 DDSALYQYFIQLHNLLTQEQCTELAAESHLLNFMQLLLTRHPAGTLKLGQDQGLSLQQLN 174

Query: 173 LLKEWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQS 232
           L+K+ +  +  Q  +LE LA    LS  QF R FK  TG+TP+A+L+R+RLE A K L  
Sbjct: 175 LIKQKIHDEPWQNTQLEGLANEVNLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLTH 234

Query: 233 GKPGTDVAYQVGFYDQAHFSKAFKATYGLSP 263
           G    DVA Q+GF+DQ+H +KAFK  + LSP
Sbjct: 235 GTLVVDVAQQLGFFDQSHLNKAFKQAFLLSP 265