Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., AraC family transcriptional regulator from Herbaspirillum seropedicae SmR1

 Score = 76.6 bits (187), Expect = 5e-19
 Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 21/232 (9%)

Query: 47  QRFYHQGAWHQVGQGGVVLMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQIEQV 106
           QR  H GA H+ G+  V     D          +GY+  V  + P    + L   +I + 
Sbjct: 55  QRLVHAGA-HRRGEVAVT----DLREQWRCQHLSGYE-NVRLLVPRTAMEEL-GEEIARP 107

Query: 107 IGFEQLI--VQDPTLFHSLQQLHHLLRQDNLSQLAK--------DCLPYQGFAPLLERYS 156
           +G  + +    DP LFH  Q +    R    +  A         D +       L +RY 
Sbjct: 108 VGELRPVQGAADPVLFHLAQAMLPAARTAGAAGAASVASETLFLDSMMLALTTHLWQRYG 167

Query: 157 YLKQPTVKPLGQ---HNLALLKEWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLT 213
                     G+      A +++++LS L Q + L ++A    LS   F R FK   GL+
Sbjct: 168 QQSSRPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFGLS 227

Query: 214 PYAWLRRLRLEQAMKLL-QSGKPGTDVAYQVGFYDQAHFSKAFKATYGLSPS 264
           P+AWL++ R+  A +LL + GK  T +A + GF DQ+HFS+ FK   G+ P+
Sbjct: 228 PHAWLQQQRIALACRLLHEGGKSMTTIALECGFSDQSHFSRVFKQVQGMGPA 279



 Score = 27.3 bits (59), Expect = 4e-04
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 16/129 (12%)

Query: 95  QQTLEANQIEQVIGFEQLIVQDPTLFHSLQQLH--HLLRQDNLSQLAKDCLPYQGFAPLL 152
           Q +  A+   ++ G+++  V+D  L H  Q+L    +  Q  LS+        Q F   L
Sbjct: 169 QSSRPASAAGRLAGWQEARVRDFMLSHLAQRLSLAEIAAQSGLSRAHFSRAFKQSFG--L 226

Query: 153 ERYSYLKQPTVKPLGQHNLALLKEWVLSQLDQPIRLEQLAQLCQLSP-TQFQRHFKAQTG 211
             +++L+Q  +    +    LL E   S       +  +A  C  S  + F R FK   G
Sbjct: 227 SPHAWLQQQRIALACR----LLHEGGKS-------MTTIALECGFSDQSHFSRVFKQVQG 275

Query: 212 LTPYAWLRR 220
           + P AWLRR
Sbjct: 276 MGPAAWLRR 284