Pairwise Alignments

Query, 270 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 276 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  173 bits (438), Expect = 4e-48
 Identities = 103/268 (38%), Positives = 153/268 (57%), Gaps = 14/268 (5%)

Query: 4   MDTVNY-RPSAYPAISLIEADYRQFAFERHYHLDIHIGLITQGVQRFYHQGAWHQVGQGG 62
           ++ +NY R  +   I L +A++  F+F++H HLD H+G++TQG Q+F ++G+ +Q+GQ G
Sbjct: 7   VENINYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFINKGSRYQLGQHG 66

Query: 63  VVLMSPDELHDGHAHSNTGYQVQVFSIEPEWLQQTLEANQIEQVIG-----FEQLIVQDP 117
           +  ++PDE HDG +    GY+V+V SI  E++      N I Q +G     F   +V DP
Sbjct: 67  LSTLNPDETHDGQSRDAEGYRVKVMSIPVEYM------NSISQEMGLKAHFFNAPMVDDP 120

Query: 118 TLFHSLQQLHHLLRQDNLSQLAKDCLPYQGFAPLLERY--SYLKQPTVKPLGQHNLALLK 175
            L+    QLH +L Q   S+LA +         LL R+    L     + L    L  +K
Sbjct: 121 ALYQYFIQLHDVLIQGQCSELAAESHLLNFMQLLLTRHPTGMLNLRQDRGLSWQQLNRIK 180

Query: 176 EWVLSQLDQPIRLEQLAQLCQLSPTQFQRHFKAQTGLTPYAWLRRLRLEQAMKLLQSGKP 235
           + +  +  Q  +LE LA    LS  QF R FK  TG+TP+A+L+R+RLE A K L  G  
Sbjct: 181 QKIHDEPWQNTQLEALADEVNLSKFQFLRQFKLATGMTPHAYLKRVRLELAKKSLTHGAL 240

Query: 236 GTDVAYQVGFYDQAHFSKAFKATYGLSP 263
             DVA Q+GF+DQ+H +KAFK  + LSP
Sbjct: 241 VADVAQQLGFFDQSHLNKAFKQAFLLSP 268