Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 727 a.a., ATP-dependent DNA helicase UvrD/PcrA from Pseudomonas fluorescens FW300-N1B4

 Score =  870 bits (2248), Expect = 0.0
 Identities = 438/725 (60%), Positives = 556/725 (76%), Gaps = 5/725 (0%)

Query: 3   DPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62
           D SLLL+ LND QR+AVAA +   L+LAGAGSGKTRVLVHRIAWL+ VE ASP S+++VT
Sbjct: 4   DLSLLLNSLNDAQRQAVAASVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVT 63

Query: 63  FTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQR 122
           FTNKAAAEMR RIE+LM    +GMW GTFHG+ HR+LRAH+ +A L + FQI+DSDDQQR
Sbjct: 64  FTNKAAAEMRHRIEQLMGINPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDDQQR 123

Query: 123 LLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAF-DPVTQTYLKLYTAYQEAC 181
           L+KR+I+   LD+++WPARQ  W+IN QKDEGLRP HI A  D    T   +Y AY+ AC
Sbjct: 124 LVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYEAAC 183

Query: 182 DRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQS 241
            RAG++DF+E+LLRAL+L R +  +  HYQ RF+HILVDEFQDTNA+QYAWLR++A    
Sbjct: 184 LRAGVIDFSELLLRALDLWRDHPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAKGGD 243

Query: 242 NVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNS 301
           ++M+VGDDDQSIYGWRGA++ENI +++ +FP    IRLEQNYRST  IL+A+N LIANN+
Sbjct: 244 SLMVVGDDDQSIYGWRGAKIENIYQYSDDFPDAQIIRLEQNYRSTAGILKAANALIANNT 303

Query: 302 ERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSR 361
            RMGK+LWTDG  GE I++Y+A+NE DEAR+VV  I+   + G   +D AILYR+NAQSR
Sbjct: 304 GRMGKELWTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNAQSR 363

Query: 362 VLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDK 421
           VLEEALL+  + YRIYGG RFFER EIK+A++YLRL+  R +D A ERVIN P RG+G+K
Sbjct: 364 VLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGIGEK 423

Query: 422 TLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLT 481
           T+E IR  AR    ++W+A   L+ ++ LTGRAA AL  F+ELI  L  + ++MPLH++T
Sbjct: 424 TVEAIRDHARHSHVSMWEAMRQLVANKGLTGRAAGALGAFMELIENLAAKCLEMPLHLMT 483

Query: 482 DHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALE 541
              ++ SGL+  +Q EKGEK +AR+ENLEELV+A R FE PEE +E + L AFL HA+LE
Sbjct: 484 QTVIEQSGLIAYHQAEKGEKGQARVENLEELVSAARNFENPEEDEEQSPLAAFLGHASLE 543

Query: 542 AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYV 601
           AG+ QADEH+D++QLMTLHSAKGLEFP VF+VG+EEG+FP +MS EE GRLEEERRL YV
Sbjct: 544 AGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAYV 603

Query: 602 GMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGR--- 658
           G+TRAMQ L +TYAE RRLYG + Y+K SRF+RE+P+G + EVR+   VSRP   G+   
Sbjct: 604 GITRAMQNLVLTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGGQQQS 663

Query: 659 FSQTVVKESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYA 718
            S         +TGF+LG  VRH  FG+G I+NFEG+G Q+RVQV F+ EG KWL+  YA
Sbjct: 664 SSSLFGGSEIPDTGFSLGQTVRHSVFGDGVILNFEGAGAQARVQVNFS-EGSKWLMLGYA 722

Query: 719 RLEKV 723
           +LE +
Sbjct: 723 KLEAI 727