Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 729 a.a., Superfamily I DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  870 bits (2248), Expect = 0.0
 Identities = 438/724 (60%), Positives = 559/724 (77%), Gaps = 5/724 (0%)

Query: 3   DPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62
           D SLLL+ LND QR+AVAAPL   L+LAGAGSGKTRVLVHRIAWL  VE AS  S+++VT
Sbjct: 4   DLSLLLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLNQVERASLHSILSVT 63

Query: 63  FTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQR 122
           FTNKAAAEMR RIE+L+H    GMW GTFHG+ HR+LRAH+ +AKL ++FQI+DSDDQQR
Sbjct: 64  FTNKAAAEMRQRIEQLLHVNPQGMWVGTFHGLAHRLLRAHWQEAKLAQNFQILDSDDQQR 123

Query: 123 LLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHIN-AFDPVTQTYLKLYTAYQEAC 181
           L+KR+I+   LD+++WPARQ  WWIN QKDEGLRP +I    D    T LK+Y AY+EAC
Sbjct: 124 LVKRVIRELGLDEQRWPARQAQWWINAQKDEGLRPRNIQPGGDLFLATQLKIYEAYEEAC 183

Query: 182 DRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQS 241
            RAG++DF+E+LLRAL+L R +  + EHYQ RF+H+LVDEFQDTNA+QYAWLR++A    
Sbjct: 184 ARAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAKGGE 243

Query: 242 NVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNS 301
           ++M+VGDDDQSIYGWRGAR+EN+ +F+++FP   TIRLEQNYRST  IL+A+N LIANN 
Sbjct: 244 SLMVVGDDDQSIYGWRGARIENLHQFSQDFPDAETIRLEQNYRSTACILKAANALIANNQ 303

Query: 302 ERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSR 361
            R+GK+LWT G  GEPIS+Y+A+NE DEAR+VV  I+     G + ++ AILYR+NAQSR
Sbjct: 304 GRLGKELWTSGCEGEPISLYAAFNEHDEARYVVESIEKAIRDGMSRSEIAILYRSNAQSR 363

Query: 362 VLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDK 421
           VLEEALL+  + YRIYGG RFFER EIK+A++YLRLI  R++D A ERVIN P RG+G+K
Sbjct: 364 VLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLIQTRDNDAALERVINVPARGIGEK 423

Query: 422 TLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLT 481
           T+E +R  AR++G ++W A    +  + ++GRAASAL+ FVEL++ L  +   M LH + 
Sbjct: 424 TVECLRQLAREQGLSMWAALHQAVGTKAVSGRAASALNGFVELVDTLALKVEGMQLHNMA 483

Query: 482 DHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQE--MTMLTAFLTHAA 539
              ++ SGLL  ++ EKGEK++AR+ENLEELV+A R F+   E  +   + L AFL HA+
Sbjct: 484 QLVIEQSGLLAYHRDEKGEKAQARVENLEELVSAARAFDSYSEEDDDIQSPLAAFLDHAS 543

Query: 540 LEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC 599
           LEAGE QA +H+D+VQLMTLHSAKGLEFPLVF+VG+EEG+FP +MS EE+GRLEEERRL 
Sbjct: 544 LEAGEQQAGDHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEESGRLEEERRLA 603

Query: 600 YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRF 659
           YVG+TRAMQ+L ITYAE RRLYG + Y+K SRF+RE+P   + EVR+   V+R  +    
Sbjct: 604 YVGITRAMQQLVITYAETRRLYGSETYNKISRFVREIPPALVQEVRLSNTVTRSFNGKSM 663

Query: 660 SQTVVKESFN--ETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAY 717
           S + + +     ET F+LG RVRH  FGEGTI+NFEGSG Q+RVQV F  EG KWL+ +Y
Sbjct: 664 SGSSLFDGAGVPETPFSLGQRVRHSLFGEGTILNFEGSGAQARVQVNFEDEGSKWLMLSY 723

Query: 718 ARLE 721
           A+LE
Sbjct: 724 AKLE 727