Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas stutzeri RCH2

 Score =  375 bits (962), Expect = e-108
 Identities = 240/636 (37%), Positives = 361/636 (56%), Gaps = 13/636 (2%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN +Q+EAV      LL+LAGAGSGKT V+  +IA+L+         ++A+TFTNKAA E
Sbjct: 4   LNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIQARHIVAMTFTNKAARE 63

Query: 71  MRGRIEELMHGT-ASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLI- 128
           M+ R+  L+ G  A G+   TFH +   I+R  Y        F I D  D + LL  ++ 
Sbjct: 64  MKERVGSLLKGAEARGLTVSTFHNLGMNIIRKEYARMGYKPGFSIFDDGDIKALLTDIMQ 123

Query: 129 KAHNLDDKQWPARQVAWWINNQKDEGLRPTHI--NAFDPVTQTYLKLYTAYQEACDRAGL 186
           K ++ DD    A ++  +I++ K++ + P     NA +P  QT   +Y  YQ        
Sbjct: 124 KEYSGDDG---ADEIKNYIDSWKNDLILPDEALANARNPKEQTAAIVYLHYQRTLKAYNA 180

Query: 187 VDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIV 246
           VDF +++L  ++L + +  I E +Q R +++LVDE+QDTNA QY  ++++ G ++   +V
Sbjct: 181 VDFNDLILLPVKLFQEHADILEKWQNRIRYLLVDEYQDTNASQYLLVKLLVGMRNQFTVV 240

Query: 247 GDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGK 306
           GDDDQSIY WRGAR EN+     ++PS+  + LEQNYRST  IL+ +N LIANN     K
Sbjct: 241 GDDDQSIYAWRGARPENLMLLKEDYPSLKVVMLEQNYRSTSRILKCANILIANNPHVFEK 300

Query: 307 QLWTDGLVGEPISVYSAYNELDEA-RFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVLEE 365
           QLW++   G+ I V    NE  E  R  +  +          +D AILYR N Q++++E 
Sbjct: 301 QLWSEMGHGDEIRVIRTRNEDAECERVALEILTEHLRTQRPYSDFAILYRGNYQAKLMEL 360

Query: 366 ALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLET 425
            L    + YR+ GG  FF RQE+KD +SY RL+ N +DD AF RVIN P R +G  TLE 
Sbjct: 361 KLQHHQIPYRLSGGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVINVPRREIGSTTLEK 420

Query: 426 IRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVE-LINALEEEGIDMPLHVLTDHA 484
           +   A +RG +++ A+  +     L  R A  L+RF   + N  ++  ++ P+  +    
Sbjct: 421 LGNYASERGISMYAAADEIGLGAHLDSRYAERLARFKHWMDNVRQQCVVNEPIAAIRSMV 480

Query: 485 VKTSGLLEMYQQEKGEK-SKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAG 543
           +       + Q    +K + AR+ N+  LV A +     +E  +MT+  A       +  
Sbjct: 481 MDIDYENWLRQNASSDKVADARMGNVWFLVDALKNTLDKDEDGDMTIEDAIGKLVLRDML 540

Query: 544 EGQADEHDDA--VQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYV 601
           E Q +E + A  VQ+MT+H++KGLEFP V+++G EE + P + S+ E+  +EEERRL YV
Sbjct: 541 ERQQEEEEGAEGVQMMTMHASKGLEFPSVYIIGFEEEILPHR-SSIESDTIEEERRLAYV 599

Query: 602 GMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELP 637
           G+TRA + L +T+A  R+ YG+     PSRF+ ELP
Sbjct: 600 GITRAKRNLALTFAAKRKQYGEVIDCTPSRFLDELP 635