Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 727 a.a., ATP-dependent DNA helicase UvrD from Pseudomonas syringae pv. syringae B728a

 Score =  856 bits (2212), Expect = 0.0
 Identities = 432/725 (59%), Positives = 561/725 (77%), Gaps = 11/725 (1%)

Query: 3   DPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62
           D SLLL+ LND QR+AVAA L   L+LAGAGSGKTRVLVHRIAWLM VE+ASP SV++VT
Sbjct: 4   DLSLLLNSLNDAQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVT 63

Query: 63  FTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQR 122
           FTNKAAAEMR RIE+LM  + +GMW GTFHG+ HR+LRAH+ +A L++ FQI+DSDDQQR
Sbjct: 64  FTNKAAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQR 123

Query: 123 LLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYLK-LYTAYQEAC 181
           L+KR+++   LD+++WPARQ  W+IN QKDEGLRP HI A   +  T +K +Y AY+ AC
Sbjct: 124 LVKRVMRELGLDEQRWPARQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIAC 183

Query: 182 DRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQS 241
            RAG++DF+E+LLRAL+L R N  +  HYQ RF+H+LVDEFQDTNA+QYAWLR++A    
Sbjct: 184 QRAGVIDFSELLLRALDLWRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGD 243

Query: 242 NVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNS 301
           ++M+VGDDDQSIYGWRGA++ENI +++ +FP    IRLEQNYRST +IL+A+N LI NNS
Sbjct: 244 SLMVVGDDDQSIYGWRGAKIENIHQYSSDFPDTEVIRLEQNYRSTASILKAANGLIINNS 303

Query: 302 ERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSR 361
            R+GK+LWTD   GE I++Y+A+NE DEAR+VV  I+   + G +  D AILYR+NAQSR
Sbjct: 304 GRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIAILYRSNAQSR 363

Query: 362 VLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDK 421
           VLEEALL+  + YRIYGG RFFER EIK+A++Y+RL+  R +D A ERVIN P RG+G+K
Sbjct: 364 VLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEK 423

Query: 422 TLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLT 481
           T+E IR  AR    ++W+A   L+ ++ LTGRAA+AL  F+ELI  L  + ++MPLH++T
Sbjct: 424 TVEAIREHARHADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLAAKVMEMPLHLMT 483

Query: 482 DHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALE 541
              ++ SGL+  ++QEKGEK +AR+ENLEELV+A R FE  E  +++T L AFL HA+LE
Sbjct: 484 QTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLE 543

Query: 542 AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYV 601
           AG+ QA EH+D++QLMTLHSAKGLEFP VF+VG+EEG+FP +MS EE GRLEEERRL YV
Sbjct: 544 AGDTQAQEHEDSIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPGRLEEERRLAYV 603

Query: 602 GMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRP-TSTGRFS 660
           G+TRAM++L +TYAE RRLYG + Y+K SRF+RE+P   + EVR+   V+RP   T +F+
Sbjct: 604 GITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVRLSNSVNRPFGGTPKFN 663

Query: 661 QTVVKESFNETG-----FNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVT 715
            + +   FN TG     F +G RV+H  FGEG I+NFEG+G Q+RVQV F+ EG KWL+ 
Sbjct: 664 SSSL---FNGTGIPETEFTMGQRVQHAVFGEGVILNFEGAGAQARVQVNFS-EGSKWLMM 719

Query: 716 AYARL 720
            YA+L
Sbjct: 720 GYAKL 724