Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas syringae pv. syringae B728a

 Score =  365 bits (937), Expect = e-105
 Identities = 241/653 (36%), Positives = 359/653 (54%), Gaps = 16/653 (2%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN +Q+EAV      LL+LAGAGSGKT V+  +IA L+         ++A+TFTNKAA E
Sbjct: 4   LNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAARE 63

Query: 71  MRGRIEELMHG-TASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLI- 128
           M+ R+  L+ G    G+   TFH +   I+R  +        F I D  D + L+  ++ 
Sbjct: 64  MKERVGTLLRGGEGRGLTVSTFHNLGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123

Query: 129 KAHNLDDKQWPARQVAWWINNQKDEGLRPTHI--NAFDPVTQTYLKLYTAYQEACDRAGL 186
           K ++ DD      ++   I + K++ + P     NA +P  QT   +YT YQ        
Sbjct: 124 KEYSGDDG---VDEIKNMIGSWKNDLILPAEALENARNPKEQTAAIVYTHYQRTLKAYNA 180

Query: 187 VDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIV 246
           VDF +++L  ++L + +  I E +Q + +++LVDE+QDTNA QY  ++++ G +    +V
Sbjct: 181 VDFDDLILLPVKLFQEHADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIGTRHQFTVV 240

Query: 247 GDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGK 306
           GDDDQSIY WRGAR EN+     ++PS+  + LEQNYRST  IL  +N LI+NN     K
Sbjct: 241 GDDDQSIYAWRGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHAFEK 300

Query: 307 QLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQ-EQGGTLTDCAILYRNNAQSRVLEE 365
           QLW++   G+ I V    NE  EA  V  +I           +D AILYR N Q++++E 
Sbjct: 301 QLWSEMGHGDEIRVIRCRNEDAEAERVAMEILTLHLRTDRPYSDFAILYRGNYQAKLIEL 360

Query: 366 ALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLET 425
            L    + YR+ GG  FF RQE+KD ++Y RL+ N +DD AF RVIN P R +G  TLE 
Sbjct: 361 KLQHHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIGSTTLEK 420

Query: 426 IRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEE-GIDMPLHVLTDHA 484
           +   A +R  +++ A+  +   + L  R    L RF   ++ + ++   + P+  L    
Sbjct: 421 LGNYATERKVSMYAATDEIGLGEHLDSRFTDRLQRFKRWMDGVRQQCAQNDPIAALRSMV 480

Query: 485 VKTSGLLEMYQQEKGEK-SKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAG 543
           +       + Q    EK +  R+ N+  L+ A +   + +E   MT+  A       +  
Sbjct: 481 MDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKLVLRDML 540

Query: 544 EGQADEHDDA--VQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYV 601
           E Q +E D A  VQ+MTLH++KGLEFP VF++G+EE + P + S+ EA  +EEERRL YV
Sbjct: 541 ERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHR-SSIEADTIEEERRLAYV 599

Query: 602 GMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPT 654
           G+TRA Q L  T+A  R+ YG+     PSRF+ ELP    D++  +     PT
Sbjct: 600 GITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELPP---DDLAWEGNDDTPT 649