Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 793 a.a., DNA helicase PcrA from Synechocystis sp000284455 PCC 6803

 Score =  436 bits (1121), Expect = e-126
 Identities = 276/784 (35%), Positives = 421/784 (53%), Gaps = 74/784 (9%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN  QR AV      LL++AGAGSGKTR L +RIA L+     +P +++AVTFTNKAA E
Sbjct: 13  LNPSQRRAVEHFCGPLLVVAGAGSGKTRALTYRIAHLIRQHRINPENILAVTFTNKAAKE 72

Query: 71  MRGRIEELM-----------------------------HGTASGMWCGTFHGICHRILRA 101
           M+ R+E++                                    +W GTFH +C RILR 
Sbjct: 73  MKERLEKIFAQAWAQQEFSQRWELLGKYEQKQLLSRVYKTVTKPLWIGTFHSLCSRILRY 132

Query: 102 H---YLDA---KLLEDFQIIDSDDQQRLLKRLI-KAHNLDDKQWPARQVAWWINNQKDEG 154
               Y D+   +  + F I D  D Q L K ++ K  +LD+KQ+  + + + ++N K+ G
Sbjct: 133 DIDKYQDSSGRRWTKQFSIFDESDVQSLFKTIVTKDMDLDEKQFNPKSIRYQVSNAKNLG 192

Query: 155 LRPTHINAFDPVTQ--TYLKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREHYQA 212
             P      +P  +     ++Y AYQ        +DF +++L    L + N+ +  ++  
Sbjct: 193 QSPETYLRENPSYKGRVIAEVYQAYQNQLAANNALDFDDLILIPTRLFQQNESVLGYWHR 252

Query: 213 RFKHILVDEFQDTNAIQYAWLRMMAG----AQS-------NVMIVGDDDQSIYGWRGARV 261
           +F HILVDE+QDTN IQY  +R+++      QS       +  +VGD DQSIY +R A  
Sbjct: 253 KFNHILVDEYQDTNRIQYDLIRLLSTNGEERQSEWDWRGRSTFVVGDADQSIYSFRMADF 312

Query: 262 ENIEKFTREF-------PSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQLWTDGLV 314
             +  F  +F        +   ++LE+NYRS + IL+A+N LI +NS+R+ K L      
Sbjct: 313 TILLNFQEDFGDRLLDGETTTMVKLEENYRSRENILQAANHLIEHNSQRIDKILKATRSG 372

Query: 315 GEPISVYSAYNELDEARFVVSKIKGWQEQGGTLT--DCAILYRNNAQSRVLEEALLQASL 372
           G+ I +Y A +E DE+RFV++KI   ++    L   D AILYR NAQSR  EE LL  ++
Sbjct: 373 GDDIILYQADDERDESRFVINKILSLRKNNPELNFGDFAILYRTNAQSRAFEEQLLNNNI 432

Query: 373 AYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARD 432
            Y I GG RF++RQEIKDA++YLR++ N  D  +  R+INTP RG+G  T+E    A+++
Sbjct: 433 RYNIVGGFRFYDRQEIKDAIAYLRVLVNPADTVSLLRIINTPRRGIGKSTIEGFVNASKE 492

Query: 433 RGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLE 492
               LW+      +   L GR+     +F  ++  ++ +  ++         ++ S  ++
Sbjct: 493 LDIPLWEIITDETSVNTLAGRSGKKTLQFARMLQEIQSQIGELSASEALSLVLEKSNYVD 552

Query: 493 MYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDD 552
             +Q+  E++  R+ NL EL  A RQFE   E      L  FL  A+L +     +E  D
Sbjct: 553 DLKQKGTEEADNRLANLGELDNAVRQFEAESEDPS---LVDFLASASLTSDLDDLEESGD 609

Query: 553 AVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYI 612
            V LMTLHSAKGLEFP+VF+VG+E+G  P   S  +   LEEERRLCYVG+TRA + L++
Sbjct: 610 EVSLMTLHSAKGLEFPVVFLVGLEQGTCPHARSLNDPLDLEEERRLCYVGITRAQENLFL 669

Query: 613 TYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSR--PTSTGRFSQTVVKESFNE 670
           T+A MR ++G  +   PS+F++ELP   L +     +  R  P +  +      K++  +
Sbjct: 670 THARMRYIWGSLETKIPSQFLQELPPDLLADGSTGRRTGRNAPAADPKGPSIAQKQARKK 729

Query: 671 TG-----------FNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYAR 719
           TG           +N+G RV H  FGEGT+ +  G G ++ + + F G G+K +  ++A 
Sbjct: 730 TGSQSTQPAKDLIWNVGDRVMHNNFGEGTVTHILGKGHKANLAIKFPGIGVKIIDPSFAP 789

Query: 720 LEKV 723
           L ++
Sbjct: 790 LRRL 793