Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 794 a.a., ATP-dependent DNA helicase, Rep family from Synechococcus elongatus PCC 7942

 Score =  420 bits (1080), Expect = e-121
 Identities = 278/775 (35%), Positives = 419/775 (54%), Gaps = 79/775 (10%)

Query: 8   LDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKA 67
           L  LN  QR AV      LL++AGAGSGKTR L  RIA L+      P +++AVTFTNKA
Sbjct: 6   LSQLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVDPENILAVTFTNKA 65

Query: 68  AAEMRGRIE--------ELMHG---------------------TASGMWCGTFHGICHRI 98
           A EM+ R+E        EL +G                         +W GTFH IC RI
Sbjct: 66  AKEMKERLERLFAQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKDLWIGTFHAICARI 125

Query: 99  LRAH---YLDA---KLLEDFQIIDSDDQQRLLKRLIKAH-NLDDKQWPARQVAWWINNQK 151
           LR     Y D    +  + F I D +D Q L+K ++    NLD K++  + V + I++ K
Sbjct: 126 LRFDIDKYCDPNGRRWTKQFSIFDENDVQGLIKEIVGNQLNLDTKKFEPKSVRYTISSAK 185

Query: 152 DEGLRPTHINAFDPVTQTYL--KLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREH 209
           + G  P       P  +  +  ++Y  Y +       +DF ++LL  ++L R N+ +  +
Sbjct: 186 NNGWSPDEFERQQPNYRGRVIGEVYRRYLDQLAANNALDFDDLLLIPVQLFRQNEQVLAY 245

Query: 210 YQARFKHILVDEFQDTNAIQYAWLRMMA--GAQS---------NVMIVGDDDQSIYGWRG 258
           +  RF+H+LVDE+QDTN  QY  +R++   GA++         +V +VGD DQSIY +R 
Sbjct: 246 WHQRFRHVLVDEYQDTNRTQYDLIRLLTTNGAETRDFDQWNHRSVFVVGDADQSIYSFRA 305

Query: 259 ARVENIEKFTREF----PSVNT---IRLEQNYRSTKTILEASNTLIANNSERMGKQLWTD 311
           A    +  F  +F    P  +T   ++LE+NYRST+ IL+A+N LI NN+ER+ K L   
Sbjct: 306 ADFTILMGFQDDFGDRLPDDDTRTMVKLEENYRSTENILQAANELIRNNTERIDKVLRPT 365

Query: 312 GLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLT--DCAILYRNNAQSRVLEEALLQ 369
              GE I+ Y A +E+ EA +VV +I+  ++Q   L   D AILYR NAQSR  E++L++
Sbjct: 366 RGSGEAIACYRADDEMAEAEYVVQQIRQLEQQHPELNWGDFAILYRTNAQSRAFEDSLVR 425

Query: 370 ASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFA 429
            ++ Y + GG+RF++R+E+KD L+YLR I N  D  +  RV+N P RG+G  T+  +  A
Sbjct: 426 WNVPYTVIGGLRFYDRREVKDILAYLRAIANPFDAVSLLRVVNVPKRGVGKTTIGRLVDA 485

Query: 430 ARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSG 489
           A++    LW+        Q L GR+A  +  F  L+   +++  ++    L    ++ SG
Sbjct: 486 AQELNVPLWEILSDSETVQNLAGRSAKGILEFANLVQHFQDQADELRPSELIRQLLEASG 545

Query: 490 LLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADE 549
            +   Q+   ++ + R  NLEELV A  Q    EE  +   L  FL  A+L A +    E
Sbjct: 546 YIAELQRSGTDEDEDRRRNLEELVNAAVQH---EEENDDPSLIGFLGTASL-ASDADNKE 601

Query: 550 HDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQK 609
            +  V LMTLH++KGLEFP+VF+VG+E+G+FPS  S ++   +EEERRLCYVG+TRA ++
Sbjct: 602 ANQQVSLMTLHASKGLEFPVVFLVGLEQGLFPSFRSLDDPRAVEEERRLCYVGITRAQER 661

Query: 610 LYITYAEMRRLYGQDKYHK-PSRFIRELPE----GCLDEVRMKAQVS---------RPTS 655
           L++T+A  RRL+G  +    PS F+ ELP     G   + R + Q +         R + 
Sbjct: 662 LFLTHASARRLWGGGREPAIPSNFLSELPAELIVGHSPQTRRQTQANFKPPVTHERRASL 721

Query: 656 TGRFSQTVVKESFNE---TGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNG 707
             R +    K    +     + +G R++H +FG G I    G+G +  + V F+G
Sbjct: 722 RDRVAANAAKVQQVQQPARHWQVGDRLQHRQFGVGRITRIFGAGDRQSIVVQFSG 776