Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 766 a.a., ATP-dependent helicase PcrA from Synechococcus elongatus PCC 7942

 Score =  164 bits (415), Expect = 2e-44
 Identities = 186/708 (26%), Positives = 311/708 (43%), Gaps = 118/708 (16%)

Query: 27  LILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGM 86
           +++A AG+GKT  +  RI  L+   E  P  ++A TF   A  ++R ++ +L      G+
Sbjct: 20  VVVAVAGAGKTTTIARRIGRLVHQVEVPPGRILATTFNRYARGQIREKLNQL--AVPVGV 77

Query: 87  WCGTFHGICHRILRAHY------LDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPA 140
              T H +  +IL+          D ++   F  + S  +Q  L   +   + + +Q   
Sbjct: 78  AVRTLHALAQQILKLEADPWPLAADGEMRRLFYDMQSAIRQGRLDLSLDLSSHEQRQIAD 137

Query: 141 RQVAWWIN--NQKDEGLR---------PTHINAFD-----PVTQTYLKLYT-AYQEACDR 183
                ++N        LR         PTH+         P +Q +L +   A+++    
Sbjct: 138 LNEESFLNYLGYLKGDLRFSAWQFEQLPTHLQTVATLEVWPESQRWLNVCVDAFEQCRQE 197

Query: 184 AGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNV 243
           A L  F ++L+ A  LL  +  IRE  ++RF  ++VDE+QD N  Q   + ++  AQ N+
Sbjct: 198 ARLRSFDDLLVDACRLLCADMGIRERVRSRFDFLIVDEYQDINRAQNLIISVLDEAQQNL 257

Query: 244 MIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSER 303
           M+VGDDDQ+IY WRGAR + I    R+   V    L++N+RS    L  +N LI +N  R
Sbjct: 258 MVVGDDDQTIYEWRGARPQLILDKLRDRQWVQ-YTLDRNFRSRAPQLLLANALIRHNRLR 316

Query: 304 MGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVL 363
             KQL             S  +  D+A  +  +I  ++++G  L +  IL R  AQ+ ++
Sbjct: 317 SPKQLQGTKAWQHHCEWRSFPSGSDQAAAIAEQILEYRDRGKPLAEMVILIRTYAQTPLI 376

Query: 364 EEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVIN--TPPRGLGDK 421
           E+ L+ A L Y I G   F+ R+E+K  L+YL       +     RV N  TP       
Sbjct: 377 EQQLIAAQLPYVIPGSQPFYLRREVKLLLAYLEFAEAERN-----RVQNGLTP------- 424

Query: 422 TLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEE--EGIDMPLHV 479
                  A RDR   L+         +  + R +  L R  EL++ L+E  +   +PL  
Sbjct: 425 -------ATRDRYDQLF---------RETSSRPSRYLKR-PELLSMLQEALDNPHLPLAT 467

Query: 480 LTDHAVK----TSGLLEMYQQEKG-------EKSKARIENLEELVTATRQF----EKPEE 524
           +     +     +  L+ +    G         + A I  +E+L+   R        PE 
Sbjct: 468 IISQRCRDRLGRNRSLQRWLDYLGWVLGAQPSSAAAAIAKIEQLIDLRRWIIDSDISPES 527

Query: 525 AQEMTM----LTAFLTHAALE-------AGEGQADEHDDA--VQLMTLHSAKGLEFPLVF 571
             +  +    L AF    A++       A + Q    D+A  V L+T+  AKGLE+  VF
Sbjct: 528 GAQKALIIDALQAFAGDRAVQSWLQEMAALQEQPPLSDEASGVNLLTVFKAKGLEWDTVF 587

Query: 572 MVGVEEGMFP---SQMSAEEAGR---------------LEEERRLCYVGMTRAMQKLYIT 613
           +  ++ G++P   S+ S    GR                EEERR+ YV +TR++  L+++
Sbjct: 588 IPDLDAGIYPFGSSRESESGPGRNSFDPLSEVALDRSLQEEERRILYVALTRSINNLHLS 647

Query: 614 YAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRFSQ 661
            A  +R          S F++E     + +++ +    R  +TG+  Q
Sbjct: 648 SATNQR----------SPFLQEAQ---ISKIQTRLPRLRALATGQLQQ 682