Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., ATP-dependent DNA helicase Rep (RefSeq) from Shewanella amazonensis SB2B

 Score =  395 bits (1015), Expect = e-114
 Identities = 247/640 (38%), Positives = 361/640 (56%), Gaps = 18/640 (2%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN  Q +AV       L+LAGAGSGKTRV++++IA+L+        ++ AVTFTNKAA E
Sbjct: 3   LNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYQARNIAAVTFTNKAARE 62

Query: 71  MRGRIEELM-HGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           M+ R+ + M    A G+W  TFH +   IL+  +    L   F + D  D   LLK L +
Sbjct: 63  MKERVAQSMGRKEARGLWISTFHTLGLEILKREHKAVGLKAGFSLFDDQDTLALLKELTE 122

Query: 130 AHNLDDKQWPARQVAWWINNQKDEGLRPTHIN--AFDPVTQTYLKLYTAYQEACDRAGLV 187
               +DK    + +A  I+N K   + P H    A D   Q +  LY  Y +       +
Sbjct: 123 KELQEDKDL-LKLLATSISNWKGALVIPDHARKIAKDEREQLFALLYQRYAQHMKAYNAL 181

Query: 188 DFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVG 247
           DF +++L    LLR N+ +R  +Q R +++LVDE+QDTN  QY  ++++ G ++   +VG
Sbjct: 182 DFDDLILLPTLLLRHNEEVRRRWQTRIQYLLVDEYQDTNGSQYELVKLLVGERARFTVVG 241

Query: 248 DDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQ 307
           DDDQSIY WRGA+ +N+    ++FPS+  I+LEQNYRS++ IL A+N LIANN     K 
Sbjct: 242 DDDQSIYSWRGAKPQNLVLLGKDFPSLKLIKLEQNYRSSQRILRAANILIANNPHVYDKS 301

Query: 308 LWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGT-LTDCAILYRNNAQSRVLEEA 366
           L+++   GEP+ V +A NE  EA  VV++I   +  G T   D AILYR N QSR++E A
Sbjct: 302 LFSELAYGEPMRVITALNEEQEAERVVAEIIRHRFVGKTSYGDYAILYRGNHQSRLIERA 361

Query: 367 LLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETI 426
           L+   + Y++ GG  FF R EIKD ++YLRL+ N +DD AF R++N P RG+G  TLE +
Sbjct: 362 LMTNRIPYKLSGGTSFFARSEIKDIMAYLRLVVNPDDDNAFLRIVNLPKRGIGPATLERL 421

Query: 427 RFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELI-----NALEEEGIDMPLHVLT 481
              A  +  +++ A      +  L   A SAL +F   I      A   EG+D    ++ 
Sbjct: 422 GNFANSKHISMFAAIFEPELELHLGNSALSALEQFGRFIVETGDIAERGEGVDAIKQLIR 481

Query: 482 DHAVKTSGLLEMYQQEKGEK-SKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAAL 540
           +   +      +Y+     K ++ R++N+ EL     +    ++  E   L   +    L
Sbjct: 482 NINYEDF----LYETSPSAKAAEMRMKNISELYRWVTEMLNGDDLDEPMTLPEVVGRLTL 537

Query: 541 E--AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRL 598
                    DE  D VQLMTLH++KGLEFP VFM+G+EE + P Q S +E   +EEERRL
Sbjct: 538 RDMMERNSEDEAGDQVQLMTLHASKGLEFPYVFMIGMEERILPHQTSIDE-DNVEEERRL 596

Query: 599 CYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPE 638
            YVG+TRA ++L+ T    RR +G+    +PSRF+ ELP+
Sbjct: 597 AYVGVTRAQRELWFTLCRERRQFGETMRCEPSRFLDELPQ 636