Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 768 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  469 bits (1206), Expect = e-136
 Identities = 288/753 (38%), Positives = 412/753 (54%), Gaps = 55/753 (7%)

Query: 8   LDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKA 67
           L GLN +QR AV      +L+L+GAG+GKTRVL  R+A +++     P+ V+AVTFTN+A
Sbjct: 25  LAGLNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRA 84

Query: 68  AAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRL 127
           A EMR R   ++   A  +W GTFH +  R+LR H     L   F I+D+DDQ RLLK++
Sbjct: 85  AREMRERAGAMIGPMAEQVWLGTFHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQI 144

Query: 128 IKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQ----TYLKLYTAYQEACDR 183
           ++A  +D K+W  +     I   KD+GL P  + A D   +      + LY  YQ+    
Sbjct: 145 LEAEGIDTKKWTPQAGMGLIQRWKDKGLLPEAVPAGDGGREYAGGRAVDLYKQYQQRLAV 204

Query: 184 AGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNV 243
               DF ++LL  L +   +  +   Y   F +ILVDE+QDTN  QY WLR++A    N+
Sbjct: 205 VNAADFGDLLLHCLTIFTKHPDVLADYSKMFHYILVDEYQDTNVAQYLWLRLLARGHGNI 264

Query: 244 MIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSER 303
             VGDDDQSIY WRGA V NI +F  +FP    +RLE+NYRST TIL A++ LI +N  R
Sbjct: 265 CCVGDDDQSIYSWRGAEVGNILRFEADFPGATVVRLERNYRSTPTILAAASGLIRHNKGR 324

Query: 304 MGKQL--WTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSR 361
           +GK L        G+ + V   ++  +EAR VV  I+  Q  G  L   A+L R   Q+R
Sbjct: 325 LGKDLRAGEGDEAGDAVIVRGLWDGEEEARRVVDDIETRQRAGDRLNGMAVLVRAGFQTR 384

Query: 362 VLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDK 421
             EE L+ A + YR+ GG RF+ERQEI+DA++YLRL+   +D  AFER+IN P RGLGD 
Sbjct: 385 AFEERLILAGVPYRVVGGARFYERQEIRDAIAYLRLVAQPDDSLAFERIINLPRRGLGDA 444

Query: 422 TLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLT 481
           +L+T+  A+R    +L  A+   +    L  +A  AL  F++ +         M    L 
Sbjct: 445 SLQTLMRASRMASISLMRAAREAIETDELRPQARKALRAFLDDMGRWRSLADAMAPDELC 504

Query: 482 DHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALE 541
              +  SG LEM++++K   ++ R+ENL+ELV+A ++FE          L AFL H +L 
Sbjct: 505 GTVLDESGYLEMWRKDKSPDAQGRVENLKELVSALKEFES---------LGAFLEHVSL- 554

Query: 542 AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAG--RLEEERRLC 599
             + +A   +DAV LMTLH+AKGLEF  VF+ G EE +FP + + +E G   LEEERRL 
Sbjct: 555 VMDNEARATEDAVTLMTLHAAKGLEFDTVFLPGWEEEIFPHRRALDENGAEALEEERRLA 614

Query: 600 YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDE--------VRMKAQVS 651
           YVG+TRA ++  I++   RR+Y + +   PSRFI ELP   ++            +    
Sbjct: 615 YVGLTRARKRAIISFVANRRVYNEWRACLPSRFIDELPPEVVERDSASGVYGSGAQGYAD 674

Query: 652 RPTSTGRFS-------------------------QTVVKESFNETGFNLGSRVRHPKFGE 686
            P   GR                           QT  +   ++     G RV H KFG 
Sbjct: 675 APGGWGRLGGPGSWGGGWGNAAPARVPAAGDTPWQTRDRSGDDQPSLRPGDRVFHDKFGG 734

Query: 687 GTIINFEGSGPQSRVQVAFNGEGIKWLVTAYAR 719
           GT++    +  Q R+++ F+  GIK ++  + R
Sbjct: 735 GTVL----AADQGRLEIDFDKAGIKKVMGGFVR 763