Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 848 a.a., UvrD-helicase domain-containing protein from Rhodopseudomonas palustris CGA009

 Score =  484 bits (1247), Expect = e-141
 Identities = 288/684 (42%), Positives = 397/684 (58%), Gaps = 65/684 (9%)

Query: 8   LDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKA 67
           L GLN +QREAV      +L+LAGAG+GKTRVL  RIA ++S   A P  +++VTFTNKA
Sbjct: 35  LSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKA 94

Query: 68  AAEMRGRIEELMHGTASGM-WCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKR 126
           A EM+ R+ +++     GM W GTFH I  RILR H    +L  +F ++D+DDQ RLLK+
Sbjct: 95  AREMKLRLGQMLGQAVEGMPWLGTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ 154

Query: 127 LIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPV---TQTYLKLYTAYQEACDR 183
           L+ A N+DDK+WPAR +A  I+  K+ GL P+ + A +          KLY  YQE    
Sbjct: 155 LLAADNIDDKRWPARMLAGLIDGWKNRGLTPSQVPAGEAAMFGNGRGGKLYAQYQERLKI 214

Query: 184 AGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQS-- 241
               DF ++LL  + L R +  +   YQ RFK ILVDE+QDTN  QY WLR+++   S  
Sbjct: 215 LNAADFGDLLLENIRLFREHPDVLRSYQNRFKFILVDEYQDTNVAQYLWLRLLSQTPSSS 274

Query: 242 ---------------------------------------------NVMIVGDDDQSIYGW 256
                                                        N+  VGDDDQSIYGW
Sbjct: 275 SLPGSTRQSISSQEDGSPGLAASRRPGDDVETSGNVVASTSAPPKNICCVGDDDQSIYGW 334

Query: 257 RGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQLWTDGLVGE 316
           RGA V+NI +F  +FP    IRLE+NYRST  IL A++ LIA+N  R+GK L T+ + GE
Sbjct: 335 RGAEVDNILRFDHDFPGAKVIRLERNYRSTGHILAAASHLIAHNEGRLGKTLRTEDVDGE 394

Query: 317 PISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVLEEALLQASLAYRI 376
            ++V  A++  +EAR +  +I+  Q QG  L + AIL R + Q R  E+  +   L YR+
Sbjct: 395 MVTVTGAWDSEEEARAIGEEIEQLQRQGHALNEIAILVRASFQMREFEDRFVTLGLPYRV 454

Query: 377 YGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCT 436
            GG RF+ER EI+DAL+YLR+IN+  DD AFER++N P RGLGD T++ +   AR R   
Sbjct: 455 IGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNVPKRGLGDATVQMLHDHARKRRIP 514

Query: 437 LWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQ 496
           L+DA+  +++   L  +A  +L   +E     + +   +    L +  +  SG  EM+Q+
Sbjct: 515 LFDAARMVIDTDELKPKARGSLRGLIESFERWQVQRDAVAHTELAEIVLDESGYTEMWQK 574

Query: 497 EKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAG-EGQADEHDDAVQ 555
           ++   +  R+ENL+ELV +  +FE          L  FL H +L    EG ADE  DAV 
Sbjct: 575 DRSADAAGRLENLKELVRSMEEFEN---------LQGFLEHISLVMDREGGADE--DAVS 623

Query: 556 LMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGR--LEEERRLCYVGMTRAMQKLYIT 613
           +MTLHSAKGLEF  VF+ G EEG+FP Q + +E GR  LEEERRL +VG+TRA ++  + 
Sbjct: 624 VMTLHSAKGLEFETVFLPGWEEGLFPHQRALDEQGRAGLEEERRLAHVGITRARKRAKLY 683

Query: 614 YAEMRRLYGQDKYHKPSRFIRELP 637
           +A  RR++G      PSRF+ ELP
Sbjct: 684 FATNRRIHGTWNTTIPSRFLDELP 707