Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 687 a.a., ATP-dependent helicase from Rhodopseudomonas palustris CGA009

 Score =  277 bits (708), Expect = 1e-78
 Identities = 217/673 (32%), Positives = 332/673 (49%), Gaps = 69/673 (10%)

Query: 4   PSLLLDGLNDKQREAVA-----APLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSV 58
           P+ +LDGLN +QR AV      AP   LL++AGAGSGKT  L HR+A L+ V  A P+ +
Sbjct: 4   PAPILDGLNPEQRCAVEHGAGPAPCPPLLVIAGAGSGKTNTLAHRVAHLV-VGGADPYRI 62

Query: 59  MAVTFTNKAAAEMRGRIEEL----MHGTASGM-----WCGTFHGICHRILRAHYLDAKLL 109
           + +TF+ +AAAEM  R+E +    +   AS +     W GTFHGI  R+LR +     L 
Sbjct: 63  LLMTFSRRAAAEMTRRVERIARKVLGDRASALSGGLHWAGTFHGIGARLLRDYAERIGLD 122

Query: 110 EDFQIIDSDDQQRLLKRLIKAHNLD----DKQWPARQVAWWINNQKDEGLRPTHI--NAF 163
             F I D +D   L+   +  H+L     D ++PA+     I ++     +P  +   A 
Sbjct: 123 PGFTIHDREDSADLMN--LVRHDLGFSKADSRFPAKATCLSIYSRCVNAGQPLDVVLGAN 180

Query: 164 DPVTQTYL----KLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILV 219
            P    +     +L+ AY EA  R  ++D+ ++LL   +++       E   +RF H+LV
Sbjct: 181 YPWCAGWAAELKQLFAAYVEAKQRHNVLDYDDLLLYWAQVME-EPAFAEEIGSRFDHVLV 239

Query: 220 DEFQDTNAIQYAWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKFTREF-PSVNTIR 278
           DE+QDTNA+Q   L  +      + +VGDD Q+IY +R A V NI  F + F P    + 
Sbjct: 240 DEYQDTNALQARVLLALKPNGVGLTVVGDDAQAIYSFRAATVRNILDFPKAFDPPARVVT 299

Query: 279 LEQNYRSTKTILEASNTLIANNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIK 338
           L++NYRST+ IL A+N +I    ER  K LWTD   G    + S  +E D+AR++V ++ 
Sbjct: 300 LDRNYRSTQAILSAANGVIDLARERFTKNLWTDRADGARPLLVSVRDETDQARYIVERVL 359

Query: 339 GWQEQGGTLTDCAILYRNNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLI 398
             +E G TL   A+L+R ++ S  LE  L + ++ +  +GG++F +   +KD L+ LR +
Sbjct: 360 DAREGGVTLKQQAVLFRTSSHSAPLELELTRRNIPFVKFGGLKFLDAAHVKDMLALLRFV 419

Query: 399 NNRNDDTAFERVINTPPRGLG----DKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRA 454
            N  D  A  RV+    +G+G     K L+T+  AA           +G L       RA
Sbjct: 420 QNPRDRVAGFRVM-LLMQGVGPASAQKALDTMTAAA---------DPLGALTALPAPPRA 469

Query: 455 ASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVT 514
            +    FV  +  L       P  +          L  ++  E  E  KA +  L ++ +
Sbjct: 470 GADWRGFVAAVQELRSGDAGWPAEIERALIWYAPHLDRIH--EDAETRKADLVQLAQIAS 527

Query: 515 ATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADE------HDDAVQLMTLHSAKGLEFP 568
                E+            FLT   L+  +  +D+       DD + L T+HSAKG E+ 
Sbjct: 528 GYPSRER------------FLTELTLDPPDATSDQAGVPTLDDDYLILSTIHSAKGQEWK 575

Query: 569 LVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYITYAEMRRLYGQDK--- 625
            VF++ V +G  PS +    +  +EEERRL YV MTRA   L++   +    +GQ+    
Sbjct: 576 QVFVLNVVDGCMPSDLGTGTSAEIEEERRLLYVAMTRAKDDLHLVVPQRFFTHGQNAQGD 635

Query: 626 ---YHKPSRFIRE 635
              Y   +RFI E
Sbjct: 636 RHVYAARTRFIPE 648