Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., DNA helicase II UvrD from Phaeobacter inhibens DSM 17395

 Score =  504 bits (1297), Expect = e-147
 Identities = 309/771 (40%), Positives = 431/771 (55%), Gaps = 73/771 (9%)

Query: 4   PSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTF 63
           P   LDGLN  QR AV      +L+LAGAG+GKT+ L  RI  L++   A P  ++AVTF
Sbjct: 24  PMPYLDGLNPAQRAAVECLEGPVLMLAGAGTGKTKALTARIVHLLTTGTAKPNEILAVTF 83

Query: 64  TNKAAAEMRGRIEELMHGTASGM-WCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQR 122
           TNKAA EM+ R+  ++     GM W GTFH IC ++LR H     L  +F I+D+DDQ R
Sbjct: 84  TNKAAREMKERVAGMLGQAVEGMPWLGTFHSICVKLLRRHAELVGLKSNFTILDADDQIR 143

Query: 123 LLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTY--LKLYTAYQEA 180
           LLK+LIKA  +DDK+WPAR +A  I++ K+  L P+ +   D     +  +  Y  YQ  
Sbjct: 144 LLKQLIKAEGIDDKRWPARMLAGVIDDWKNRALTPSKVPVSDASAYNHRGVDFYAQYQAR 203

Query: 181 CDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQ 240
                 VDF ++LL  + + + N  + E YQ  F+ I+VDE+QDTN  QY WLR++AGA 
Sbjct: 204 LKDLNAVDFGDLLLHMVTIFQDNPDVLEQYQRWFRFIMVDEYQDTNVAQYLWLRLLAGAH 263

Query: 241 SNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANN 300
            N+  VGDDDQSIYGWRGA V NI +F ++FP  N +RLEQNYRST+ IL A++ +I  N
Sbjct: 264 KNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGANVVRLEQNYRSTEHILSAASGVIRGN 323

Query: 301 SERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGT-------LTDCAIL 353
           S R+GK+LWT+   GE + +   ++  +EAR++  +I+  Q   GT       L + AIL
Sbjct: 324 SGRLGKELWTEARGGEKVRLIGHWDGEEEARWIGEEIEAMQR--GTRGLAPVDLNNMAIL 381

Query: 354 YRNNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINT 413
            R + Q R  E+  L   L YR+ GG RF+ER EI+DA++Y R + + +DD AFER++NT
Sbjct: 382 VRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAMAYFRQVISPDDDLAFERIVNT 441

Query: 414 PPRGLGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFV-ELINALEEEG 472
           P RGLGDK  +TI+  AR  G +L + +   +    + G+   AL + V +L       G
Sbjct: 442 PKRGLGDKAQQTIQTMARSNGVSLVEGARLAVESGQIKGKGGKALHQLVTDLARWGRLAG 501

Query: 473 IDMPLHV-LTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTML 531
                H+ L +  +  SG   M+Q +K   S  R+ENL+ELV A   FE          L
Sbjct: 502 DADTTHMELAEIILDESGYTTMWQADKNPDSPGRLENLKELVKALEAFEN---------L 552

Query: 532 TAFLTHAALEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAG- 590
             FL H +L     + D     V +MTLH+AKGLEFP VF+ G E+G+FPSQ S +E+G 
Sbjct: 553 QGFLEHVSLIMDNDKQDA-AQKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGL 611

Query: 591 -RLEEERRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEV----- 644
             LEEERRL YVG+TRA +   I++A  RR++GQ +   PSRFI ELPE  ++ +     
Sbjct: 612 KGLEEERRLAYVGITRAEEICTISFAGNRRVFGQWQSQLPSRFIDELPEENVEVLTPPGL 671

Query: 645 -------------------------------------RMKAQV-SRPTSTGRFSQTVVKE 666
                                                RM+++   R  S  R S++ V +
Sbjct: 672 YGGGYGAAAPSGGGGAVRSTIEDRMAAADGYNSPGWKRMQSRAGERGLSQPRESKSSVID 731

Query: 667 SFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAY 717
               + F +G RV H KFG G I   EG     +++V F   G K +V  +
Sbjct: 732 LTATSAFMVGERVFHQKFGYGAITGIEG----DKLEVEFEKAGTKKVVARF 778