Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 1138 a.a., putative UvrD/REP helicase from Phaeobacter inhibens DSM 17395

 Score =  171 bits (433), Expect = 2e-46
 Identities = 181/686 (26%), Positives = 298/686 (43%), Gaps = 89/686 (12%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN++QR A       LL+ AG G+GKT+ LV R++ L       P S++ +TF+NKAA E
Sbjct: 198 LNEEQRHAAEHDGNALLLKAGPGTGKTQTLVGRLSVLKD-RSVDPESILLLTFSNKAAGE 256

Query: 71  MRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK----- 125
           M  R        A   W GTFH     +LR  +  A L  D ++ID+ +   LL+     
Sbjct: 257 MTDRAMLAWPEAAGSAWIGTFHSFGLDLLRRFHDRAGLPSDPRLIDATEAIALLEDEFPR 316

Query: 126 -RLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAF------------DPVTQT--- 169
            RL   ++L D     R +   I+  KDE +                    D +      
Sbjct: 317 LRLTHFNDLWDPTDNLRSILSAISRAKDEVIDQHRYRELAQQMADAAETGEDKIAAEKCL 376

Query: 170 -YLKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAI 228
               +Y  Y++     G VDF +++ R   L+  ++ +R   Q R+ H+LVDE+QD N  
Sbjct: 377 EIASVYDLYEQLKAERGAVDFGDLVARPTALIESDRAVRTELQGRYDHVLVDEYQDVNRA 436

Query: 229 QYAWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKF-TREFPSVNTIRLEQNYRSTK 287
               LR +     N+ +VGD  QSIY +RGA   NI++F T +FP   +++L  NYRS++
Sbjct: 437 SVRLLRALKPDGKNLWVVGDAKQSIYRFRGASSYNIDRFETEDFPGGKSLQLSMNYRSSQ 496

Query: 288 TILEASNTLIANNSERMGKQL----WTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQ 343
            I +  +          G Q        G+    +SV S  +E++E   + +++    + 
Sbjct: 497 EICDTFSAFATTRMAASGFQANAFKGKSGVSPSFVSVESKDHEIEE---IAARVIAACDD 553

Query: 344 GGTLTDCAILYRNNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRN- 402
             +  D A++ + NA+   +   L    +     G +  F+R EIK+ALS L L+ +   
Sbjct: 554 TTSFRDQAVICKGNARLAEVAAGLEACGIPVLFLGPL--FDRPEIKEALSLLSLVIDPRA 611

Query: 403 ---DDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALS 459
                 A  +    P   +    +ET+R A++      W   + ++      GRA++   
Sbjct: 612 MGLTCVASMQPFQMPIEDVA-VAIETVR-ASKKPQLLDWRTVLAMVPGMSERGRASAQ-- 667

Query: 460 RFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQF 519
               LI+A   EGI+      T   + T   L+  +      ++A   N    + A  QF
Sbjct: 668 ---ALIDAF--EGIE---PTATAWQIITKIYLDRTRFAADIATQAHEGNANPAL-ALWQF 718

Query: 520 EK------PEEA-QEMTMLTAFLTHAALEAGEGQ------ADEHDDAVQLMTLHSAKGLE 566
           +       PE++   +  L   +    + + E        A +  DAV+LMT+H +KGLE
Sbjct: 719 QNFLRSALPEKSGYPVRDLLEHIRRLVILSDERDLRDLPAAAQSIDAVRLMTIHGSKGLE 778

Query: 567 FPLVFMVGVEEGMFPSQ---------------------MSAEEAGRLEEERRLCYVGMTR 605
           F ++ +  +  G  P                         A +AG  EE+R L +V ++R
Sbjct: 779 FKVLHLPSLTSGSIPRSAKQSRGLPPPDGMIEGPVFRGSDAVDAGHDEEQRCLFFVALSR 838

Query: 606 AMQKLYITYAEMRRLYGQDKYHKPSR 631
           A   L++ YA  ++  G    H+ SR
Sbjct: 839 AEDSLFL-YAPNKKSNG----HRQSR 859