Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., DNA-dependent helicase II (RefSeq) from Shewanella loihica PV-4

 Score =  962 bits (2488), Expect = 0.0
 Identities = 469/724 (64%), Positives = 579/724 (79%), Gaps = 4/724 (0%)

Query: 2   IDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAV 61
           +D S LLDGLNDKQREAV AP  ++L+LAGAGSGKTRVL HRIAWLM VE+ SP+S++AV
Sbjct: 1   MDVSSLLDGLNDKQREAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV 60

Query: 62  TFTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQ 121
           TFTNKAAAEMR R+E++       MW GTFHG+ HR+LR HY DA L + FQI+DSDDQ 
Sbjct: 61  TFTNKAAAEMRERVEKVSGSNMGRMWIGTFHGLAHRLLRTHYQDANLPQSFQILDSDDQL 120

Query: 122 RLLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFD-PVTQTYLKLYTAYQEA 180
           RL+KR++K+ NLD+KQ+P RQ   +IN +KD+GLRP HI+A   P+ Q  LK+Y  YQE+
Sbjct: 121 RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLKIYQVYQES 180

Query: 181 CDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQ 240
           CDRAGLVDFAEILLRA EL     HI EHYQ RFK+ILVDEFQDTNAIQYAW+R++AG+ 
Sbjct: 181 CDRAGLVDFAEILLRAHELWLNKPHILEHYQERFKNILVDEFQDTNAIQYAWIRVLAGST 240

Query: 241 SNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANN 300
           +NVMIVGDDDQSIYGWRGA+VEN+ +F ++FP+  TIRLEQNYRS+  IL ASN LIANN
Sbjct: 241 ANVMIVGDDDQSIYGWRGAQVENLHRFLQDFPAAQTIRLEQNYRSSGNILNASNELIANN 300

Query: 301 SERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQS 360
            +R+GK+LWT+   GE I +Y A+NE+DEARF+V +I  WQ+ GG L+DCAILYR+NAQS
Sbjct: 301 PDRLGKKLWTEDKDGEKIGLYCAFNEMDEARFIVGRITDWQDMGGNLSDCAILYRSNAQS 360

Query: 361 RVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGD 420
           RVLEEALL   +AYRIYGG+RFFERQEIKDA+ YLRLI+N+NDD AFER+INTP RG+GD
Sbjct: 361 RVLEEALLHKGMAYRIYGGLRFFERQEIKDAMGYLRLISNKNDDAAFERIINTPTRGIGD 420

Query: 421 KTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVL 480
           +TL+ +R  AR +  TLW   + LL+++VL+GRAA+A+  F++LI  L++E  +  LH +
Sbjct: 421 RTLDILRSTARQQELTLWQTCLRLLDEKVLSGRAANAVRSFMDLIVTLQQETAEQSLHRM 480

Query: 481 TDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAAL 540
           TDH ++ SGL  MY+ EKGEK++AR+ENLEELVTA R F  PE+ ++M  L AFL+HAAL
Sbjct: 481 TDHVIQASGLKAMYEAEKGEKARARVENLEELVTAARTFVMPEDLEDMGELNAFLSHAAL 540

Query: 541 EAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY 600
           EAGEGQAD   DAVQLMTLHSAKGLEFP+VFM GVEEG+FPSQM+ +E  RL+EERRLCY
Sbjct: 541 EAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGIFPSQMAMDEGDRLDEERRLCY 600

Query: 601 VGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRFS 660
           VGMTRAM++LYITYAE RR+YG++ Y +PSRFI+E+P   + E+RM+  VS P S+ RF 
Sbjct: 601 VGMTRAMKQLYITYAESRRIYGRENYARPSRFIKEIPGDYVQEIRMRTSVSAPASSNRFG 660

Query: 661 QTVVK---ESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAY 717
           Q        +FN++GFN+G RV HPKFGEG + NFEGSG Q+RVQV F   G KWLV AY
Sbjct: 661 QAQPAFNGSAFNDSGFNIGQRVNHPKFGEGKVTNFEGSGAQARVQVDFLDVGSKWLVVAY 720

Query: 718 ARLE 721
           ARLE
Sbjct: 721 ARLE 724