Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., ATP-dependent DNA helicase Rep (RefSeq) from Shewanella loihica PV-4

 Score =  394 bits (1012), Expect = e-114
 Identities = 250/638 (39%), Positives = 361/638 (56%), Gaps = 14/638 (2%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN  Q +AV       L+LAGAGSGKTRV++++IA+L+        ++ AVTFTNKAA E
Sbjct: 3   LNPGQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYQARNIAAVTFTNKAARE 62

Query: 71  MRGRIEELM-HGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           M+ R+ + M    A G+W  TFH +   I++  Y    L   F + D  D   LLK L +
Sbjct: 63  MKERVAQSMGRKEARGLWISTFHTLGLEIIKREYKVVGLKPGFSLFDDQDTLALLKELTE 122

Query: 130 AHNLDDKQWPARQVAWWINNQKDEGLRPTHI--NAFDPVTQTYLKLYTAYQEACDRAGLV 187
                DK    R +   I+N K + + P      A D  +Q +  LY  Y +       +
Sbjct: 123 KEFDGDKDL-LRMLMTAISNWKGDLMTPDGAIKTARDEQSQLFALLYQRYAQHMKAYNAL 181

Query: 188 DFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVG 247
           DF +++L    LLR  Q +RE +Q R +++LVDE+QDTN  QY  ++++ G ++   +VG
Sbjct: 182 DFDDLILLPTLLLRHKQEVRERWQKRIQYLLVDEYQDTNTSQYELVKLLVGERARFTVVG 241

Query: 248 DDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQ 307
           DDDQSIY WRGA+ +N+    ++FP++  I+LEQNYRS++ IL A+N LIANN     K 
Sbjct: 242 DDDQSIYSWRGAKPQNLVLLGKDFPNLKLIKLEQNYRSSQRILRAANILIANNPHVYDKS 301

Query: 308 LWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGT-LTDCAILYRNNAQSRVLEEA 366
           L+++   GEP+ V  A NE  EA  VV+++   +  G T   D AILYR N QSR+LE A
Sbjct: 302 LFSELAYGEPLRVLIAANEEQEAERVVAEMIRHKFVGKTQFGDYAILYRGNHQSRLLERA 361

Query: 367 LLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETI 426
           L+   + Y++ GG  FF R EIKD ++YLRL+ N +DD AF RV+N P RG+G  TLE +
Sbjct: 362 LMTNRIPYKLSGGTSFFGRAEIKDIMAYLRLVVNPDDDNAFLRVVNLPKRGIGPATLERL 421

Query: 427 RFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVE-LINALEEEGIDMPLHVLTDHAV 485
              A ++  ++++A      +  L   A SAL +F + +++  E      P+  +     
Sbjct: 422 GNYANEQHISMFEAIFHSELNHHLPPAAMSALYQFGKFIVDTGEAATRGEPVEAVKQLIR 481

Query: 486 KTSGLLEMYQQEKGEKSKA---RIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALE- 541
             +   E Y  E    +KA   R++N+ EL     +  + +E  E   L   +T   L  
Sbjct: 482 HIN--YEDYLYETSTSAKAAEMRMKNISELYRWVTEMLEGDELDEGMTLPEVVTRLTLRD 539

Query: 542 -AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY 600
                  DE  D VQLMTLH++KGLEFP VFMVGVEE + P Q S +E   +EEERRL Y
Sbjct: 540 MMERNSEDEAGDQVQLMTLHASKGLEFPYVFMVGVEERILPHQTSIDE-DNVEEERRLAY 598

Query: 601 VGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPE 638
           VG+TRA ++L+      RR +G+    +PSRF+ ELP+
Sbjct: 599 VGITRAQRELWFMICRERRQFGEVMRCEPSRFLMELPQ 636