Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 700 a.a., Probable ATP-dependent DNA helicase II UvrD2 from Mycobacterium tuberculosis H37Rv

 Score =  231 bits (589), Expect = 9e-65
 Identities = 205/651 (31%), Positives = 309/651 (47%), Gaps = 105/651 (16%)

Query: 7   LLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNK 66
           L+ GL+D+QREAV AP   + +LAGAG+GKTR + HRIA L++    +   V+AVTFT +
Sbjct: 8   LIAGLDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQR 67

Query: 67  AAAEMRGRIEELMHGTASGMWCG-----TFHGICHRILRAHYLDAKLLED--FQIIDSDD 119
           AA EMR R+  L     +G   G     TFH   +R LR  Y  ++++ D  +Q++DS  
Sbjct: 68  AAGEMRSRLRALDAAARTGSGVGAVQALTFHAAAYRQLR--YFWSRVIADTGWQLLDSKF 125

Query: 120 Q--QRLLKRLIKAHNLDDKQWPARQVAWWINNQ--KDEGLRPTHINAFDP------VTQT 169
               R   R     + DD +  A ++ W   +    +E +        DP      +   
Sbjct: 126 AVVARAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAV 185

Query: 170 YLKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQ 229
           Y + Y A +   D   L+DF ++LL     +  +  + E +Q R++  +VDE+QD   +Q
Sbjct: 186 YSE-YEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQ 244

Query: 230 YAWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTI 289
              L    G + ++ +VGD +Q+IY + GA    +  F+R FP    +RLE++YRST  +
Sbjct: 245 QRVLSAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQV 304

Query: 290 LEASNTLIANNSERM-GKQLWTDGLVGEPISVYSAYNELD---EARFVVSKIKGWQEQGG 345
           +  +N +IA    R+ G +L   G   EP  V S +   D   EA  V + I      G 
Sbjct: 305 VSLANRVIAAARGRVAGSKLRLSG-QREPGPVPSFHEHSDEPAEAATVAASIARLIASGT 363

Query: 346 TLTDCAILYRNNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDT 405
             ++ AILYR NAQS V EEAL QA +AY++ GG  FF RQEIK AL  L+ ++ R+ D 
Sbjct: 364 PPSEVAILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDA 423

Query: 406 AFERVINTPPRGLGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELI 465
           A   V+      LG      +   AR+R    W+                 AL+   EL+
Sbjct: 424 ALSDVVRAVLAPLGLTAQPPVGTRARER----WE-----------------ALTALAELV 462

Query: 466 NALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEA 525
              ++E    P       A++  GLL     E   +++AR                P   
Sbjct: 463 ---DDELAQRP-------ALQLPGLL----AELRRRAEAR---------------HPPVV 493

Query: 526 QEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP---S 582
           Q +T+       A+L A +G                   LE+  VF+VG+ +G  P   +
Sbjct: 494 QGVTL-------ASLHAAKG-------------------LEWDAVFLVGLADGTLPISHA 527

Query: 583 QMSAEEAGRLEEERRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFI 633
                 +  +EEERRL YVG+TRA   L +++A + R  G  +  KPSRF+
Sbjct: 528 LAHGPNSEPVEEERRLLYVGITRARVHLALSWA-LSRSPGGRQSRKPSRFL 577