Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 789 a.a., UvrD/REP helicase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  258 bits (660), Expect = 6e-73
 Identities = 226/729 (31%), Positives = 345/729 (47%), Gaps = 79/729 (10%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFS-VMAVTFTNKAAA 69
           LN  Q +A       LL++AGAGSGKTR +V+R+A L  VE+  P S ++ +TFT K+A 
Sbjct: 8   LNPAQYQAATTLEGPLLVIAGAGSGKTRTIVYRLANL--VEQGVPASAILLLTFTRKSAR 65

Query: 70  EMRGRIEELMHGTAS-----------GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSD 118
           EM  R   L+  +A+           G+  GTFH   + +LR          D  ++D  
Sbjct: 66  EMLHRAGRLLEHSATAAVHGGVHGVTGVQGGTFHAFAYSVLRQFRPSGYEAGDLTVMDGA 125

Query: 119 DQQRLLKRLIKAHNLD--DKQWPARQ-VAWWINNQKDEGLRPTHI---NAFDPVTQT--Y 170
           D    ++       +   D+ +P  Q +   I+  +++ L    +    AF  +      
Sbjct: 126 DIVDAVRHCKDNQGIGKGDRSFPRTQNIVGLISKSRNKELDIDEVIRREAFHLLVHAEGI 185

Query: 171 LKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQY 230
            ++  AY       GL+D+ ++L     LLR    + +  +ARF++I+VDE+QDTN +Q 
Sbjct: 186 GRIAAAYHAYRREHGLLDYDDLLFELERLLRERADVLDWCRARFRYIMVDEYQDTNLVQA 245

Query: 231 AWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTIL 290
             + ++AG   NVM VGDD QSIY +RGA V NI  F + FP+   I+LE+NYRS + +L
Sbjct: 246 RLVHLLAGEGGNVMAVGDDAQSIYAFRGADVRNILDFPKLFPAAQIIKLEENYRSVQPVL 305

Query: 291 EASNTLIANNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDC 350
           + +N ++A   +   K+L+     G+   V    ++L +A  VVS+I  +  +     D 
Sbjct: 306 DLTNAILAEAPQAYRKKLFAAREGGDRPQVVRPLSDLTQASLVVSRIVEFL-RSYPPHDI 364

Query: 351 AILYRNNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERV 410
           A+L+R   QS  +E  L +  + +R YGG+R+ E   +KD LSY RL+ N  D  AF+R 
Sbjct: 365 AVLFRAGYQSYHVEVQLNKLGVKFRKYGGLRYSEAAHVKDVLSYARLVLNPLDLPAFQR- 423

Query: 411 INTPPRGLGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALE- 469
           I    +G+G KT   +   AR               +   T RA     R+ EL   L+ 
Sbjct: 424 IAAMSKGVGPKTTLKLYDVARQ-------------GNPEATSRAC---LRYPELRADLDL 467

Query: 470 EEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKA-------RIENLEELVTATRQFEKP 522
            +G+    H        TS L E+ +  K     A       R + LE+L+     +   
Sbjct: 468 LDGLRKRPH------TPTSLLEEVMEHYKPRMEAAFPDDWPRRQQGLEQLLQIAASYRD- 520

Query: 523 EEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPS 582
                   L  F++  +LE   G+ +E+ D+V L T+HSAKGLE+  V ++ + E  FPS
Sbjct: 521 --------LDLFISDLSLE-DPGEEEENRDSVVLSTIHSAKGLEWGAVLLIDLVEERFPS 571

Query: 583 QMSAEEAGRLEEERRLCYVGMTRAMQK--LYITYAEMRRLYGQDKYHKPSRFIRELPEGC 640
           + +   A   EEERRL YV  TRA     L++  +   R  G ++   PS F+RELP   
Sbjct: 572 RHAIARAEDFEEERRLMYVACTRARDHLCLFVPASLYSRGDGGNQPAVPSPFVRELPAHL 631

Query: 641 LDEVRMK---AQVSRPTSTGRFSQTVVKESFNET---GFNLGSRV-------RHPKFGEG 687
            DE+        + R    G+  Q         +   GF  G+R        R P F EG
Sbjct: 632 FDEMHESYSGGLMRRDAPNGQTGQRGAGFGGGRSGGGGFAQGNRFDGAPGIPRPPMFAEG 691

Query: 688 TIINFEGSG 696
           T     G G
Sbjct: 692 TTPGRAGGG 700