Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 672 a.a., DNA helicase, ATP-dependent, RepA type from Marinobacter adhaerens HP15

 Score =  376 bits (966), Expect = e-108
 Identities = 237/647 (36%), Positives = 359/647 (55%), Gaps = 24/647 (3%)

Query: 8   LDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKA 67
           ++ LN +Q EAV      +L+LAGAGSGKT V+  +IA+L+         + AVTFTNKA
Sbjct: 1   MNKLNPRQSEAVRYADGPMLVLAGAGSGKTSVITRKIAYLIEQLGIPGRHIAAVTFTNKA 60

Query: 68  AAEMRGRIEELMHGTAS-GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKR 126
           A EM+ R+  ++    + G+   TFH +   ++R  +        F I D++D + LL+ 
Sbjct: 61  AREMKERVGRIVDRKLTRGLIVSTFHNLGLNMIREEHTHLGYHPGFSIFDAEDAKALLQD 120

Query: 127 LIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHI--NAFDPVTQTYLKLYTAYQEACDRA 184
           L+      +       +   I++ K+    P      A D   Q    +Y  Y E     
Sbjct: 121 LMLREASAEAGDELNDIQMTISSWKNAMRGPAEALSKAADEREQRIAIIYKKYNEYLKAY 180

Query: 185 GLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVM 244
             VDF +++L  + L R N  +   ++ + +++LVDE+QDTN  QY  ++ +   ++   
Sbjct: 181 NAVDFDDLILLPVMLFRSNPDVLAKWRRKIRYMLVDEYQDTNVCQYELVKQLVAERAAFT 240

Query: 245 IVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERM 304
           +VGDDDQSIY WRGAR EN+ +   +FPS+  ++LEQNYRST  IL ++NT+IANN    
Sbjct: 241 VVGDDDQSIYAWRGARPENLAQLKEDFPSLKIVKLEQNYRSTARILRSANTVIANNPHVF 300

Query: 305 GKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQ-EQGGTLTDCAILYRNNAQSRVL 363
            K LW+D  +GE I +    NE  E   V ++I   + ++G    D A+LYR N Q+R+L
Sbjct: 301 EKALWSDHTIGEEIRIVRCRNEDAETDRVATEILDQKLKKGLDFRDFAVLYRGNHQARLL 360

Query: 364 EEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTL 423
           E  L    + YRI GG  FF + EIKDA+SYLRL+ N +DD AF RV+N P R +G +TL
Sbjct: 361 EMKLQAYQIPYRISGGQSFFSKNEIKDAMSYLRLLINPDDDAAFLRVVNVPRREIGPRTL 420

Query: 424 ETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINAL-----EEEGIDMPLH 478
           E +   AR R  +L+ A   +  +  +T +    L RF   ++A       E  I +   
Sbjct: 421 EQLSHYARSRNVSLFKALGDMGAETHVTEKGLDRLRRFAHWVDATCERLHSENPIPVIKQ 480

Query: 479 VLTDHAVKTSGLLEMYQQEKG--EKSKARIENLEELVTATRQF--EKPEEAQEMTM---L 531
           + TD   +     E   Q  G  ++++ R+EN+  LV + ++   +    A E+ +   +
Sbjct: 481 LFTDIEYE-----EWLHQHSGTPKQAERRMENIWYLVESIQRMLDDGKGTADELGIEDAI 535

Query: 532 TAFLTHAALEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGR 591
           T  +    +E  + + D+  D VQL+TLH++KGLEFP VF++G+EE + P + S EE G 
Sbjct: 536 TKLILRDMME--QREEDDDSDKVQLLTLHASKGLEFPHVFIMGLEEEILPHRSSIEE-GN 592

Query: 592 LEEERRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPE 638
           +EEERRL YVG+TRA + L +TYA  R+ YG+     PSRF+ ELPE
Sbjct: 593 IEEERRLMYVGITRARETLTLTYAATRKQYGEKLETIPSRFLDELPE 639