Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 719 a.a., ATP-dependent DNA helicase, UvrD/REP family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  276 bits (705), Expect = 3e-78
 Identities = 233/748 (31%), Positives = 353/748 (47%), Gaps = 76/748 (10%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFS-VMAVTFTNKAAA 69
           LN  Q EAV      +L++AGAGSGKTR +V+R+A L+  E   P S ++ +TFT KAA 
Sbjct: 8   LNAAQYEAVTTLDGPVLVIAGAGSGKTRTVVYRLANLL--ERGVPASSILLLTFTRKAAN 65

Query: 70  EMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           EM  R   L+     G+  GTFH   + +LR ++       D  I+D  D    ++    
Sbjct: 66  EMLQRASRLLGYGVQGIAGGTFHAFAYSLLRQYHPARLEGRDLTIMDGADSVAAIQHCKD 125

Query: 130 AHNL--DDKQWPARQVAWWINNQK-------DEGLRPTHINAF---DPVTQTYLKLYTAY 177
           A  +   DK +P  Q    + ++        DE LR    +     D V+    ++  AY
Sbjct: 126 ALGIARGDKSFPKTQTVLSLLSKSRNKELPLDEVLRREAYHLLVHADGVS----RIGEAY 181

Query: 178 QEACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMA 237
            E     GL+D+ ++L     LLR    +  H + R+++I+VDE+QDTN +Q   ++++A
Sbjct: 182 AEYRAEHGLLDYDDLLFEVERLLRERPDLLAHLRDRYRYIMVDEYQDTNLVQARLVQLLA 241

Query: 238 GAQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLI 297
           G   NVM VGDD QSIY +RGA V+NI  F + FP    I+LE+NYRST+ +L+ +N ++
Sbjct: 242 GEGGNVMAVGDDAQSIYAFRGANVQNILSFPQFFPGTRIIKLEENYRSTQPVLDLTNAIL 301

Query: 298 ANNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNN 357
           A   +   K L+T    G    V    ++L +A  VVS++           + A+L+R  
Sbjct: 302 AEAPQAYRKHLYTSREDGVLPQVVRPLSDLTQASIVVSRVSELLRTYPP-HEIAVLFRAG 360

Query: 358 AQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRG 417
             S  +E  L +  + +R YGG+R+ E   +KD ++Y RL+ N  D  AF+RV     RG
Sbjct: 361 FHSYHVEVQLNKLGIRFRKYGGVRYSEAAHVKDVMAYARLVLNPLDLPAFQRVA-ALSRG 419

Query: 418 LGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAAS---ALSRFVELINALEEEGID 474
           +G KT   +   AR               D   T  A +    L   +EL++ L +    
Sbjct: 420 VGPKTTLRLYEVARQ-------------GDPAATAHACARYPQLRADLELLDRLRKR-TP 465

Query: 475 MPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAF 534
            P  +L +        LE    +   + +  +E L ++ +A R             L  F
Sbjct: 466 APATLLEEVIEHYQPRLEAAYPDDWPRRQQGLEQLVQIASAYRD------------LDLF 513

Query: 535 LTHAALEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEE 594
           ++  +LE   G  +E  D+V L T+HSAKGLE+  V ++ + E  FPS+ +   A   EE
Sbjct: 514 ISDLSLE-DPGTEEEDRDSVVLSTIHSAKGLEWSAVIILDLVEDRFPSRHAVTRADDFEE 572

Query: 595 ERRLCYVGMTRAMQK--LYITYAEMRRLYGQDKYHKPSRFIRELP-----------EGCL 641
           ERRL YV  TRA ++  L++  +  +R  G ++   PS F+RELP            G L
Sbjct: 573 ERRLMYVACTRARERLMLFVPSSLYQRGEGGNQPAAPSPFVRELPAALYEEWYESYTGGL 632

Query: 642 DEVRMKAQVSRPTSTGRFSQTVVKESFNETG--------FNLGSRVRHPKFGEGTIINFE 693
                   V+RP     F      ES    G          LG    H  FG G I+   
Sbjct: 633 QRRDTSRPVARPAVASTFGCAPRPESAPVPGGPSPVAGAAKLGF-CTHKIFGRGKIVQHL 691

Query: 694 GSGPQSRVQVAFNGEGIKWLVTAYARLE 721
              P  + +V F G G+K ++  Y  LE
Sbjct: 692 ---PPDKYRVNFPGVGLKVILGDYLTLE 716