Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA helicase II from Caulobacter crescentus NA1000

 Score =  487 bits (1253), Expect = e-141
 Identities = 273/641 (42%), Positives = 390/641 (60%), Gaps = 16/641 (2%)

Query: 8   LDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKA 67
           LDGLN +QREAV      LL+LAGAG+GKTRVL  R+A +++   A P+ ++AVTFTNKA
Sbjct: 40  LDGLNPEQREAVETTEGPLLVLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFTNKA 99

Query: 68  AAEMRGRIEELMHGTASGM-WCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKR 126
           A EMR RI  ++   A G+ W GTFH +  +ILR H     L  ++ IID+DD +RLLK+
Sbjct: 100 AREMRERITHIIGPEAEGLRWLGTFHSVAAQILRRHAELIGLKSNYTIIDTDDNERLLKQ 159

Query: 127 LIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHI---NAFDPVTQTYLKLYTAYQEACDR 183
           LI+A N+D K+W  R ++  I+  K+ G  P  +    A +      + LY  YQE    
Sbjct: 160 LIEAENIDAKRWTPRILSQIIDGWKNRGWTPDRVPTSEAGEFANGKGISLYRQYQERLRI 219

Query: 184 AGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNV 243
               DF ++LL  + L  G+  + + +Q RFK+++VDE+QDTN  QY WLR++A  + NV
Sbjct: 220 LNACDFGDLLLHNISLFTGHPDVLDEFQQRFKYVMVDEYQDTNVAQYLWLRLLAQGRQNV 279

Query: 244 MIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSER 303
             VGDDDQSIYGWRGA V+NI +F R+FP    +RLE NYRST+ IL A++ LI  N  R
Sbjct: 280 CCVGDDDQSIYGWRGAEVDNILRFERDFPGAKVVRLECNYRSTEHILAAASGLITANKGR 339

Query: 304 MGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVL 363
           +GK LWT    GE + V   ++   E+R +  +I+  ++ G   +  AIL R + Q R  
Sbjct: 340 LGKTLWTPSKGGEKVKVSGVWDGEAESRLIADEIERAKKAGRKYSQMAILVRASFQMRAF 399

Query: 364 EEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTL 423
           EE  +   + Y++ GG RFFER EI+DA +YLRLI + +DD AFER++NTP RG+GD ++
Sbjct: 400 EERFVLLQIPYKVVGGPRFFERAEIRDAHAYLRLIQSPDDDLAFERIVNTPKRGIGDTSV 459

Query: 424 ETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDH 483
           + +   AR  G +  +A+  ++    L  R  +ALS F+  ++             L + 
Sbjct: 460 QKLLQIARLGGISTVEAARQIITSDELPARTRTALSNFIRDLDRWRSLVGTAHHQRLLET 519

Query: 484 AVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAG 543
            ++ SG  +  + +KG  S+ R+ENL+ELV +   F+          L A+L H +L   
Sbjct: 520 VLEESGYTDALRLDKGPTSQTRLENLKELVQSMGAFD---------TLEAYLEHVSL-VM 569

Query: 544 EGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGR--LEEERRLCYV 601
           +   +   DAV +MTLHSAKGLEFPLVF+ G EEG+FPSQ S ++ G   LEEERRL YV
Sbjct: 570 DLDREATGDAVWIMTLHSAKGLEFPLVFLPGWEEGVFPSQRSMDDKGEKGLEEERRLAYV 629

Query: 602 GMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLD 642
           G+TRA ++  I++   R++YG+     PSRF+ ELP   +D
Sbjct: 630 GITRAREEARISFVANRQVYGRWTSQLPSRFVDELPIAHVD 670



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 676 GSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAY 717
           G RV H KFG G +   EG    +++ VAF+  G K ++ ++
Sbjct: 764 GDRVFHVKFGYGKVTGIEG----NKLTVAFDKAGEKKVIDSF 801