Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., Superfamily I DNA or RNA helicase from Paraburkholderia bryophila 376MFSha3.1

 Score =  177 bits (449), Expect = 1e-48
 Identities = 184/609 (30%), Positives = 271/609 (44%), Gaps = 67/609 (11%)

Query: 7   LLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVM-AVTFTN 65
           +LDGLN +QRE VA    + + +A  G+GKT+ +  + A  +    A P +V+ AVTF+ 
Sbjct: 1   MLDGLNPQQRE-VAELRRHCVAIACPGAGKTKTIAAKAALRL----ADPRAVVGAVTFSK 55

Query: 66  KAAAEMRGRIEELMH-GTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL 124
            AA E+R RI  L   G  S +  GTFH + +R L              I    D+  LL
Sbjct: 56  DAAVELRDRILALAGAGARSRLIAGTFHSLANRQLGKR----------DIATDGDRAGLL 105

Query: 125 KRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYLKLYTAYQEACDRA 184
            R++    L   QW   +V   I   K    R   ++A  P  Q    LY AYQEA  R 
Sbjct: 106 ARVLAELGL---QWKVDEVIPVIERIKTNFGR---VDANSPDAQ----LYHAYQEALTRN 155

Query: 185 GLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVM 244
           G +DF ++L  ++  +       E Y   F  +LVDEFQDT+ +QY W+ + A A +NV 
Sbjct: 156 GKIDFQDMLRLSVAGMESGDI--EPYG--FTDLLVDEFQDTDPLQYRWVELHARAGANVT 211

Query: 245 IVGDDDQSIYGWRGA-RVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSER 303
           +VGDDDQSIYG+R A     +E F   F S   + L  NYR    IL A++ +I NN ER
Sbjct: 212 VVGDDDQSIYGFRAALGFRGMESFAESF-SAQRVVLGSNYRCRAEILSAADRVIRNNVER 270

Query: 304 MGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVL 363
           + K L  +   G  I+     +E  +A   V+ ++  Q Q G    CAIL R N     +
Sbjct: 271 VAKVLRAERGAGGAITARRFDDEYADA---VAAVEQLQPQLGAGKSCAILARTNRILDPI 327

Query: 364 EEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTL 423
           E       + Y    G     R +     + L ++  R  +   + V+     G+    L
Sbjct: 328 EAVCRSHGVPYYRASGSSVLNRPQGALMCNLLLIVEGRKQN-GLDAVLGY--TGMSSTHL 384

Query: 424 ETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDH 483
             +    +D G  L   +   L    L    ASA   F++ +    +      +     +
Sbjct: 385 SALH---QDMGAELVQRAKKDLVGLGLPEDTASAYRAFMKRLAEWTQ------MSERKFY 435

Query: 484 AVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAG 543
           ++   G+LEM        + AR +  +  + AT           ++ LT           
Sbjct: 436 SLALDGVLEMMM------TYARDDQAKRAIQATYDV--------LSRLTGTFGERIEYLK 481

Query: 544 EGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGM 603
                  D A+ L T+HS+KGLE+  V++   EEG+ P + + E      EERRL YV M
Sbjct: 482 RDNNKPADGALVLTTMHSSKGLEWDHVWITRAEEGVVPDEKATE-----SEERRLFYVAM 536

Query: 604 TRAMQKLYI 612
           TRA   L I
Sbjct: 537 TRARDTLTI 545