Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., ATP-dependent DNA helicase Rep from Paraburkholderia bryophila 376MFSha3.1

 Score =  350 bits (899), Expect = e-100
 Identities = 248/699 (35%), Positives = 370/699 (52%), Gaps = 68/699 (9%)

Query: 10  GLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAA 69
           GLN  Q EAV       L+LAGAGSGKTRV+  +IA L+  +   P  + AVTFTNKAAA
Sbjct: 4   GLNPAQNEAVRYLDGPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAA 63

Query: 70  EMRGRIEELMHG---TASG----------MWCGTFHGICHRILRAHYLDAKLLEDFQIID 116
           EMR R+ +L+ G   T  G          +   TFH +  +ILR       L   F I+D
Sbjct: 64  EMRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTFHSLGVQILRQEAEHVGLKPQFSIMD 123

Query: 117 SDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDP---------VT 167
           SDD   +++  + +    DK +  R++   I+  K+  + P    A            V 
Sbjct: 124 SDDCFGMIQEQVGS---TDKGF-IRKIQSIISLWKNGLIMPEQAIAIAANEDEHQAAIVY 179

Query: 168 QTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNA 227
           + Y+    AYQ        VDF +++    EL   N+ +R+ +Q + +++L+DE+QDTNA
Sbjct: 180 RNYVATLHAYQA-------VDFDDLIRLPAELFASNEQVRDRWQNKLRYLLIDEYQDTNA 232

Query: 228 IQYAWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTK 287
            QY  L+ +AG ++    VGDDDQ+IYGWRGA +EN+ +  ++FP ++ I+LEQNYRST 
Sbjct: 233 CQYELLKQLAGPRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPKLHVIKLEQNYRSTV 292

Query: 288 TILEASNTLIANNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQ-EQGGT 346
            IL A+N +IANN +   K+LW++  +G+ I+V    +E  EA  VV ++   + E+   
Sbjct: 293 RILTAANNVIANNPKLFEKKLWSEHGMGDSITVTPCNDEEHEAESVVFRLSAHKFERRAN 352

Query: 347 LTDCAILYRNNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTA 406
             D AILYR N Q+R+ E+ L +  + Y + GG  FF++ EIKD  +YLRLI N NDD A
Sbjct: 353 FRDYAILYRGNFQARIFEQVLRRERIPYVLSGGQSFFDKAEIKDICAYLRLIANANDDPA 412

Query: 407 FERVINTPPRGLGDKTLETIRFAARDRGCTLWDA----------------SVGLLND--Q 448
           F R I TP RG+G+ TLE +   A     +L++A                 + +  D  Q
Sbjct: 413 FIRAITTPRRGVGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSPRQIEPMRVFCDFMQ 472

Query: 449 VLTGRAA--SALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARI 506
            LT RA   +A +   EL++A+  E              K   +LE  +  K + +KA  
Sbjct: 473 RLTDRAEKDAAGTLLDELMDAIHYEAYLYDAFDERQAQSKWQNVLEFIEWLKRKGTKAEP 532

Query: 507 ENLEELVTATRQFEKPEEAQE------MTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560
           +  +E   +  Q     +  +        +L    T A +   EG+ +E  DAV+L T+H
Sbjct: 533 QGSDESAGSGNQEATGYDTADGFGDTGKNLLGLIQTVALMSMLEGR-EEDPDAVRLSTVH 591

Query: 561 SAKGLEFPLVFMVGVEEGMFPSQMSAEEA----GRLEEERRLCYVGMTRAMQKLYITYAE 616
           ++KGLE+P VF+VGVEEG+ P +  A++      R+EEERRL YV +TRA + L++ + +
Sbjct: 592 ASKGLEYPHVFLVGVEEGIMPHRGGADDEPIDDARIEEERRLMYVAITRAQRSLHLNWCK 651

Query: 617 MRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTS 655
            R+   +    +PSRFI   PE  LD+         P S
Sbjct: 652 KRKRARETVVCEPSRFI---PEMLLDDAPPPTPEEAPMS 687