Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 788 a.a., ATP-dependent DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  453 bits (1165), Expect = e-131
 Identities = 282/784 (35%), Positives = 428/784 (54%), Gaps = 70/784 (8%)

Query: 8   LDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKA 67
           ++ LN+ Q  AV       L++AGAGSGKTRVL ++IA+L+      P++++A+TFTNKA
Sbjct: 6   IEELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLE-NGYQPWNILALTFTNKA 64

Query: 68  AAEMRGRI-EELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKR 126
           A EM+ RI  ++    A  +W GTFH +  RILRA          F I DS D + L++ 
Sbjct: 65  AREMKDRIARQVGMERARYLWMGTFHSVFSRILRAEAKYIGFTSQFTIYDSADSKSLIRS 124

Query: 127 LIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYL--------KLYTAYQ 178
           +IK   LD+K +    V   I++ K+  + PT   A     +  +        ++YT Y 
Sbjct: 125 IIKEMGLDEKTYKPGMVQARISSAKNHLVSPTGYAANKEAYEGDMAAKVPAVREIYTRYW 184

Query: 179 EACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAG 238
           E C +AG +DF ++L+    L R    +   Y+ +F+++LVDE+QDTN  Q++ +  +  
Sbjct: 185 ERCRQAGAMDFDDLLVYTYILFRDFPEVLARYREQFRYVLVDEYQDTNYAQHSIVLQLTK 244

Query: 239 AQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIA 298
               V +VGDD QSIY +RGA ++NI  FT+ +P+    +LEQNYRST+TI+ A+N+LI 
Sbjct: 245 ENQRVCVVGDDAQSIYSFRGADIDNILYFTKVYPNTKVFKLEQNYRSTQTIVCAANSLIE 304

Query: 299 NNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGW-QEQGGTLTDCAILYRNN 357
            N  ++ K+++++   GEPI V+ AY++++E   V +KI    +E      D AILYR N
Sbjct: 305 KNERQIRKEVFSEKERGEPIGVFQAYSDVEEGDIVANKIAELRREHSYGYADFAILYRTN 364

Query: 358 AQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRG 417
           AQSRV EEAL + S+ Y+IYGG+ F++R+EIKD ++Y RL+ N ND+ AF+R+IN P RG
Sbjct: 365 AQSRVFEEALRKRSMPYKIYGGLSFYQRKEIKDVIAYFRLVVNPNDEEAFKRIINYPARG 424

Query: 418 LGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAA-SALSRFVELINALEEEGIDMP 476
           +GD T+  I  AA + G +LW A    L+  +   +   + L  F ELI     + +D  
Sbjct: 425 IGDTTVGKIISAATENGVSLWAALCEPLSYGLNINKGTHTKLQGFRELIEGFMTDQVDKS 484

Query: 477 LHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQF--EKPEEAQEMTMLTAF 534
            + +    ++ SG++    Q+   ++ +R EN+EELV     F   + EE      LT F
Sbjct: 485 AYEIGTDIIRRSGIINDVCQDTSPENLSRKENIEELVNGMNDFCALRQEEGNPNISLTDF 544

Query: 535 LTHAALEAGEGQADEHDDA--VQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRL 592
           L+  AL   +  +D+ DD   + LMT+HSAKGLEF  VF+VG+EE +FPS M  +    L
Sbjct: 545 LSEIALLTDQ-DSDKADDGEKITLMTVHSAKGLEFKNVFVVGLEENLFPSGMVGDSPRAL 603

Query: 593 EEERRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCL----------- 641
           EEERRL YV +TRA +  YI++A+ R  YG+ ++  PSRF+R++    L           
Sbjct: 604 EEERRLFYVAITRAEEHCYISFAKTRFRYGKMEFGSPSRFLRDIDVNYLRLPHEAGVSRS 663

Query: 642 --------------------------------DEVRMKAQVSRPT----------STGRF 659
                                           D  R KAQV  PT           +G  
Sbjct: 664 VDEGAGRFRREIEGGFTRAASPTRTPYGTKFSDRERPKAQVIAPTVPKNLKKVSAVSGSS 723

Query: 660 SQTVVKESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYAR 719
            ++    S + TG   G  + H +FG G +I  EG+G  ++  + F   G K L+  +AR
Sbjct: 724 IRSASAGSASVTGVQAGQMIEHERFGLGEVIRVEGTGDNAKATIHFKNAGDKQLLLRFAR 783

Query: 720 LEKV 723
            + +
Sbjct: 784 FKVI 787