Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., ATP-dependent DNA helicase Rep (RefSeq) from Shewanella sp. ANA-3

 Score =  393 bits (1009), Expect = e-113
 Identities = 253/672 (37%), Positives = 372/672 (55%), Gaps = 16/672 (2%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN  Q +AV       L+LAGAGSGKTRV++++IA+L+     +  ++ AVTFTNKAA E
Sbjct: 3   LNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAARE 62

Query: 71  MRGRIEELM-HGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           M+ R+ + M    A G+W  TFH +   I++  +    L   F + D  D   LLK L +
Sbjct: 63  MKERVAQSMGRKEARGLWISTFHTLGLEIVKREHKVLGLKPGFSLFDDQDTLALLKELTQ 122

Query: 130 AHNLDDKQWPARQVAWWINNQKDEGLRPTHIN--AFDPVTQTYLKLYTAYQEACDRAGLV 187
               +DK    + +A  I+N K   + P      A D   Q +  LY  Y +       +
Sbjct: 123 KELQEDKDL-LKALAGAISNWKGGLIIPDQARKLAKDEQQQLFAMLYQRYAQHMKAYNAL 181

Query: 188 DFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVG 247
           DF +++L    LLR ++ +R  +Q + +++LVDE+QDTN  QY  ++++ G ++   +VG
Sbjct: 182 DFDDLILLPTLLLRHHEEVRTRWQTKIQYLLVDEYQDTNTSQYEMVKLLVGERARFTVVG 241

Query: 248 DDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQ 307
           DDDQSIY WRGA+ +N+    ++FP +  I+LEQNYRS++ IL A+N LIANN     K 
Sbjct: 242 DDDQSIYSWRGAKPQNLVLLGKDFPKLKLIKLEQNYRSSQRILRAANILIANNPHVYDKS 301

Query: 308 LWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGT-LTDCAILYRNNAQSRVLEEA 366
           L+++   GEP+ V  A NE  EA  VV++I   +  G T   D AILYR N QSR+LE A
Sbjct: 302 LFSELAYGEPMRVLFAANEEQEAERVVAEIIRHKFVGRTQFGDYAILYRGNHQSRLLERA 361

Query: 367 LLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETI 426
           L+   + Y++ GG  FF R EIKD + YL+L+ N +DD AF RV+N P RG+G  TLE +
Sbjct: 362 LMTNRIPYKLSGGTSFFARAEIKDIMGYLKLVVNPDDDNAFLRVVNLPKRGIGPSTLERL 421

Query: 427 RFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVE-LINALEEEGIDMPLHVLTDHAV 485
              A ++  ++++A      +  L   A SAL +F   +++  E      P+  +     
Sbjct: 422 GNFANEKHISMFEAIFDPDLNHHLPPNAMSALYQFGRFIVDTGEHAERGEPVEAVKQLIR 481

Query: 486 KTSGLLEMYQQEKGEKSKA---RIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALE- 541
           K +   E Y  E    +KA   R++N+ EL     +    +E  E   L   +    L  
Sbjct: 482 KIN--YEDYLYETSTSAKAAEMRMKNISELYRWVTEMLSGDELDEPMTLPEVVNRLTLRD 539

Query: 542 -AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY 600
                  DE  D VQLMTLH++KGLEFP VFMVGVEE + P Q S +E   ++EERRL Y
Sbjct: 540 MMERNSEDEGGDQVQLMTLHASKGLEFPYVFMVGVEERILPHQTSIDE-DNVDEERRLAY 598

Query: 601 VGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRP--TSTGR 658
           VG+TRA ++L+ T    RR +G+    +PSRF+ ELP+  L     K Q +      TGR
Sbjct: 599 VGITRAQRELWFTLCRERRQFGETMRCEPSRFLHELPQDDLIWENRKPQQTEQERMQTGR 658

Query: 659 FSQTVVKESFNE 670
              + +++ F +
Sbjct: 659 SHISNLRDMFKK 670