Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., UvrD/REP helicase (RefSeq) from Shewanella sp. ANA-3

 Score =  142 bits (357), Expect = 6e-38
 Identities = 172/623 (27%), Positives = 277/623 (44%), Gaps = 70/623 (11%)

Query: 24  ENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGR-IEELMHGT 82
           +N L+ A  GSGKT VLV     L+S + A  +SV  +TFT+ A  E+  R +  L    
Sbjct: 15  DNTLVCALPGSGKTYVLVELTKRLLSRDGA--YSVHLLTFTDAARVELTERMLHALTPRA 72

Query: 83  ASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQ 142
              +   TFH     + R   L+ +LL       +++    +K ++   +  D     R 
Sbjct: 73  MERVTISTFHSTALAMTRGK-LNRRLLM------ANELMLFVKSVLNEADHLDLIDKFRF 125

Query: 143 VAWWINNQKDEGLRPTHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRG 202
               +    DE  R   ++     + T + LY  Y++   + G  DF  +   ++  L  
Sbjct: 126 KVPDVVRLFDEMGRSQDLSK--EYSGTEVALYELYKDMLIKQGKTDFNVVCQLSVSWLAQ 183

Query: 203 NQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVGDDDQSIYGWRGAR-V 261
               RE       HILVDEFQDT+A+QY WLR  A     +++VGDDDQ+IY +RG +  
Sbjct: 184 ----REIPPVSATHILVDEFQDTDALQYMWLREHALLGKKLVVVGDDDQAIYSFRGGQGY 239

Query: 262 ENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIA-NNSERMGKQL----WTDGLVGE 316
           +N+  F  EF + +   L   +R +K IL  +  LI  NN +R+ K +       G V +
Sbjct: 240 DNMVAFQSEF-NADAYVLRDCFRCSKEILNRAGMLIKFNNPDRIDKPMNAVREEQGTV-K 297

Query: 317 PISVYSAYNELDEARFVVSK-IKGWQEQGGTLTDCAILYRNNAQSRVLEEALLQASLAYR 375
            I   +  N+L++    VSK    W          A++ RNNA    +E  +    + Y 
Sbjct: 298 IIKSGTMDNQLNQILDAVSKEPHTW----------AVIARNNAILDRVETVIQGHGIEYN 347

Query: 376 IYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGC 435
             GG  FF+       +    +I+ ++DD    R +      L     ET R     R  
Sbjct: 348 RRGGKSFFDGVAPYSLIQIASVISGKHDDHTLHRAL----AALSVPEAETARIIGLCR-- 401

Query: 436 TLWDASVGLLNDQVLTGRAASALSRFVELINALEE--EGIDMPLHVLTDHAVKTSGLLEM 493
           T      GL + ++  G  A  L +F  L  A  +   G +          VK   LL +
Sbjct: 402 TAKTTFGGLKHAEI--GHHAD-LQKFHSLAEAWHDIPAGREDAKRTYMQSIVK---LLAI 455

Query: 494 YQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDA 553
           +  ++ +K    + +    V A R +E   E+     +    +    +  + Q++E    
Sbjct: 456 HLDKRDQKHAQVVGD----VIAGRHWESLGES-----IAQLKSSLDCKKRKDQSEEAAPK 506

Query: 554 VQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYIT 613
           + L+T+HS+KGL+F  V++VG + G  PS+ +  E G++ EERRL YV MTRA+  L ++
Sbjct: 507 LSLITMHSSKGLQFDNVWIVGSDTGTIPSKEALAE-GKIAEERRLMYVAMTRAISSLTMS 565

Query: 614 YAEMRRLYGQDKYHKPSRFIREL 636
           Y             +PS F+ E+
Sbjct: 566 YTS-----------EPSEFLYEV 577