Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., Protein involved in catabolism of external DNA from Pseudomonas stutzeri RCH2

 Score =  252 bits (643), Expect = 7e-72
 Identities = 123/278 (44%), Positives = 180/278 (64%)

Query: 2   LSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGEY 61
           ++YRH+FHAGNHADVLKH+V S I   L +KE PF Y D+H+GVG YDL  + + +TGE+
Sbjct: 1   MNYRHAFHAGNHADVLKHLVLSRIFALLSRKEAPFAYLDSHAGVGLYDLAGDQASRTGEW 60

Query: 62  KQGIARIWQQDNIPAELDSYLDAIRQLNQGETLRYYPGSPRVARAHLREQDRMVLTELHP 121
            QGIARIWQ +  PA LD YL  IR+LN    LRYYPGSP +AR   REQDR+ L E HP
Sbjct: 61  LQGIARIWQAEAQPALLDDYLGVIRELNPDGALRYYPGSPELARQLTREQDRLQLNEKHP 120

Query: 122 SDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYELAKEYRDVVRAIA 181
            D  LL+     DR+V++++ +G+   +A +P QE+R ++LIDPP+E A E    V AI 
Sbjct: 121 EDGALLKDNMAGDRRVAVHRGEGWFVPRALMPTQEKRVVLLIDPPFEQADELSRCVTAIK 180

Query: 182 QSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRKILQIELGVAPDTNERGMTASGMI 241
           ++  R    I  IWYP+ +   +    + L      K+L+ EL V P  +   ++ SG+ 
Sbjct: 181 EALGRMRQTIGVIWYPIKDERQLKRFYQDLARSGAPKLLRAELFVHPADDSSRLSGSGLA 240

Query: 242 VINPPWTLESQMQTILPFLKQAIAPATGHYKVEWVVPE 279
           ++NPPW LE +++ +LP+L + +A + G ++++W++ E
Sbjct: 241 IVNPPWGLEEELRELLPWLAEQLAQSQGSWRLDWLIEE 278