Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 289 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  244 bits (623), Expect = 2e-69
 Identities = 121/267 (45%), Positives = 177/267 (66%), Gaps = 3/267 (1%)

Query: 2   LSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGEY 61
           ++YRH +HAGN ADVLKH V + ++  L+QK+K F   DTH+G+G YDL+ E ++KTGE+
Sbjct: 1   MNYRHIYHAGNFADVLKHAVLARLVTYLKQKDKAFRVLDTHAGIGVYDLSSEEAQKTGEW 60

Query: 62  KQGIARIWQQD---NIPAELDSYLDAIRQLNQGETLRYYPGSPRVARAHLREQDRMVLTE 118
           ++GI R+ + +    + A L+ YL A+R LN    L +YPGSP++AR  LR QDR+   E
Sbjct: 61  REGIGRLIEAELPAPVAAILEPYLSAVRDLNPEGGLMHYPGSPKLARMLLRPQDRLSAME 120

Query: 119 LHPSDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYELAKEYRDVVR 178
           LHP D+  L + F  D Q  I + DG+  L A LPP+E+RGLVL+DPP+E   EY  +V 
Sbjct: 121 LHPEDHEALHRLFEGDFQSRITRLDGWLALGAHLPPKEKRGLVLVDPPFEAEGEYERLVD 180

Query: 179 AIAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRKILQIELGVAPDTNERGMTAS 238
            +A++Y+R+  GIY +WYP+     I D  E L+ LEI K+L  EL V  D    G+  S
Sbjct: 181 GLAKAYRRFTGGIYCLWYPLKKGAPIRDFHESLKALEIPKMLCAELSVRSDRVTPGLAGS 240

Query: 239 GMIVINPPWTLESQMQTILPFLKQAIA 265
           G++++NPP+TL+ ++  +LP+LK  +A
Sbjct: 241 GLVIVNPPFTLKGELDILLPYLKTQLA 267



 Score = 23.9 bits (50), Expect = 0.004
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 239 GMIVINPPWTLESQMQTILPFLKQAIAPATGHYKVEW 275
           G+++++PP+  E + + ++  L +A    TG     W
Sbjct: 161 GLVLVDPPFEAEGEYERLVDGLAKAYRRFTGGIYCLW 197