Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  293 bits (751), Expect = 2e-84
 Identities = 141/284 (49%), Positives = 197/284 (69%), Gaps = 5/284 (1%)

Query: 1   MLSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGE 60
           MLSYRH FHAGN+ADVLKH +   +++ +Q+K+KPFVY DTHSG G Y L  E+++KTGE
Sbjct: 1   MLSYRHGFHAGNYADVLKHAILLQVIDLMQKKDKPFVYVDTHSGAGGYSLMDEFAQKTGE 60

Query: 61  YKQGIARIWQQDNIPAELDSYLDAIRQLNQG-----ETLRYYPGSPRVARAHLREQDRMV 115
           Y+ GIAR+W + ++PA L  Y++A+R  N+G     E L +YPGSP     HLR+ DRMV
Sbjct: 61  YRDGIARLWDKTDLPASLKHYVEAVRHFNEGNENTSEDLSWYPGSPAFVDMHLRQNDRMV 120

Query: 116 LTELHPSDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYELAKEYRD 175
           L ELH +D+ LL + F   RQV + K DG + L AS+PP ERRG+VL+DP +E+  +Y  
Sbjct: 121 LHELHGTDFELLNEYFEDARQVQVSKWDGLSGLLASVPPLERRGVVLVDPSFEIKTDYEA 180

Query: 176 VVRAIAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRKILQIELGVAPDTNERGM 235
           V  AI ++++++ATG+Y +WYPVVNR   + ML  L+   IR+ L+IE G+ PD++E GM
Sbjct: 181 VADAIIKAHRKFATGVYMLWYPVVNRAQTEAMLSKLKDSGIRRQLRIEQGIKPDSDEFGM 240

Query: 236 TASGMIVINPPWTLESQMQTILPFLKQAIAPATGHYKVEWVVPE 279
           TA+G+ VINPPW L++    +L +L   +    G+ KVEW V E
Sbjct: 241 TAAGLWVINPPWQLDTIATEMLDYLHPVLNVDGGYVKVEWEVGE 284